Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01301 ATGTTCTCTAAGCTTCCACAGCATCCTCAACACCAACATCATCCATACCAACACCAAACTCAGCCTCACCCACAACAACAACAACAGCTTCTTCCGTTCGCCAACAACCCTTTCCAGCTCTCTCGAGATTCCCAGAACTCCGAGGAAGATGATAGTCGTAGTAGCGGTGGTGCCACCGCGGTCACCCCCACCCGGAAGAGTAAACGGTCCGAACCTGTTTCTACCGGTGATGGATCCTCCATTGAAGTGGTACGGCGAACTAGAGGTCGCCCACCTGGATCCAAGAATAAACCGAAACCGCCAGTTATTATAACTCGGGAATCTGAACCAGCTATGAGTCCGTACATTCTCGAAGTTCCTGGTGGTAGCGACGTAGTGGAAGCAATCGCACACTTTTGTCGCAACAAGAATATGGGTCTCTGTGTTCTTACGGGTTCGGGTACTGTAGCAAACGTCACACTTAGGCAGCCTTCTACCACACCAGGAGCTACAGTCACCTTCCATGGGAGATTTGATATCTTATCTATTTCAGCCACGTTCATGCCTCAGCAAACGCCGTCGTTTCCTGCAGTACCGAACGGTTTTGCCATCTCGCTGGCAGGCCCTCAGGGTCAGATCGTTGGGGGCTTCGTAGCTGGAGGGTTAATGGCAGCTGGAACGGTGTTTGTGATTGCTGCTTCATTCAATAACCCCTCGTACCATAGATTGCCATCAGATGAAGAGGTTAGGGCTTCTGTTTCTGGCGGTGGAGGCGGTGGAGACGGTTCACCGCCTGTTTCAGGAGGCGGTGTCGAAAGTGGACATGGTCCAGCAGAATCTTGCGGCATGTCTATGTACAGTTGTCACCTACCTTCAGCTGATGTGATTTGGGCTCCAACAGCAAGAGCACCTCCACCCCCACCTTACTGA 909 0.5193 MFSKLPQHPQHQHHPYQHQTQPHPQQQQQLLPFANNPFQLSRDSQNSEEDDSRSSGGATAVTPTRKSKRSEPVSTGDGSSIEVVRRTRGRPPGSKNKPKPPVIITRESEPAMSPYILEVPGGSDVVEAIAHFCRNKNMGLCVLTGSGTVANVTLRQPSTTPGATVTFHGRFDILSISATFMPQQTPSFPAVPNGFAISLAGPQGQIVGGFVAGGLMAAGTVFVIAASFNNPSYHRLPSDEEVRASVSGGGGGGDGSPPVSGGGVESGHGPAESCGMSMYSCHLPSADVIWAPTARAPPPPPY* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01301 302 MobiDBLite consensus disorder prediction 10 43 - -
Pte16g01301 302 Gene3D - 113 246 - -
Pte16g01301 302 Pfam Plants and Prokaryotes Conserved (PCC) domain 114 230 IPR005175 -
Pte16g01301 302 ProSiteProfiles PPC domain profile profile. 109 249 IPR005175 -
Pte16g01301 302 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 46 291 IPR014476 GO:0003680
Pte16g01301 302 MobiDBLite consensus disorder prediction 51 81 - -
Pte16g01301 302 MobiDBLite consensus disorder prediction 1 107 - -
Pte16g01301 302 SUPERFAMILY AF0104/ALDC/Ptd012-like 111 240 - -
Pte16g01301 302 FunFam AT-hook motif nuclear-localized protein 113 247 - -
Pte16g01301 302 MobiDBLite consensus disorder prediction 239 269 - -
Pte16g01301 302 CDD DUF296 114 228 IPR005175 -
Pte16g01301 302 PIRSF ESCAROLA 3 293 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01301 Pte-Chr16 32566116 32568192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01301 75 299 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 68.831 1.20e-104 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01301 - - qsa:O6P43_015380 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g01301 16 32566116 32568192 Pte16g01301 16 32566116 32568192 RCT