Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01285 ATGGAATTTGACCCGCACCAAAACCAAGTGGAGGAGGACGAGGAGGATGAAGAAGAAATGGGAGTTCCAGTGCGTCCTCTGGTTTTCGACTCTCTAATCAACTCGGCCACAAAGGCTTCCAAGATGGGCCACTCTCCTGAAGGAGGTGGTAGTGGTGGGGTTTCATCGACGATCGCAGCTAGGAAAGGAAGTAGATCTTCGTCTGTCAGGTATAGGGAATGTCTAAAAAACCACGCCGTCGGCATAGGCGGCCATGCTGTGGACGGTTGCCGTGAGTTCCTGGCTGCTAGTGAGGAAGGAAAGCTAGAAGCTTTGATATGTGCCGCCTGCAACTGTCACCGAAACTTCCACCGCAAAGAAACTGATGATGAAACAACAACGTCGTTTCCACAACACCGAGGCCAACATCATCGCCATCACCAGAAACATTATGATCCTCACCAAGTACAACCTTATTATGGGACTCCGTCACCTGCAAGTGGTGGCTACCTTCAGCCACCCCACCAACGCCCTCATCCCTTGAATTCTCACCAGCTACCCCACCATCCGCTGGCTCTGCCGGCTGCTGTAACATCCGGAGAAGGACATAGTAGGGAGGAGGACATGTCAAACCCAAGTAGCAGTGGCGGCGGTGGAAGTGGAAGTGGGACGAAGAATAAGAGGTTTAGGACAAAGTTCACGCAGGAGCAGAAGGACAGGATGCAGGCATTTGCGGAGAGACTTGGTTGGAGGATGCAGACGCATGATGATGCAACCGTGGAGCAGTTCTGTGCAGAGATTGGTGTCAAGAGACACGTACTCAAAGTTTGGATGCACAACAACAAGAAGAATGGATTTGCTTTGCTTGCTGATGGATTCACTGCTTTCAGTTTATGTAAAGGGAGAACTGCCTGTTGCAAAGTCATGCATGCATTAGTTGAGCTGTTCGTACTACACAGAGACCAAGAGTTCAATTCTGGAAAGTGGATTGTCACTACAAAAAGAAAGTTCGATGGTGGAGAGAGTGCAACAAAATGGCCAACAAGACGTGCTGCTCGGATTCTAACTACTGGCTTCAAGACTCTTGTACCACTAAGTGTTGATGAAAATTCATGGACTAGTACACTGCGGCCTAAGAGCTGTGGCATACGTGAAGCTGCATTTCATGAGATCGGACCTCGAGCTCCGTTGGTGCCGGAATTGAAGTTGACCGGTGGTGAGGTACTTGTTTCGATCACAGGAATTGAAGTCCAGTTTTCCCTTGCAGACCCGATATCGTTTTAA 1263 0.4949 MEFDPHQNQVEEDEEDEEEMGVPVRPLVFDSLINSATKASKMGHSPEGGGSGGVSSTIAARKGSRSSSVRYRECLKNHAVGIGGHAVDGCREFLAASEEGKLEALICAACNCHRNFHRKETDDETTTSFPQHRGQHHRHHQKHYDPHQVQPYYGTPSPASGGYLQPPHQRPHPLNSHQLPHHPLALPAAVTSGEGHSREEDMSNPSSSGGGGSGSGTKNKRFRTKFTQEQKDRMQAFAERLGWRMQTHDDATVEQFCAEIGVKRHVLKVWMHNNKKNGFALLADGFTAFSLCKGRTACCKVMHALVELFVLHRDQEFNSGKWIVTTKRKFDGGESATKWPTRRAARILTTGFKTLVPLSVDENSWTSTLRPKSCGIREAAFHEIGPRAPLVPELKLTGGEVLVSITGIEVQFSLADPISF* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01285 420 MobiDBLite consensus disorder prediction 123 220 - -
Pte16g01285 420 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 70 120 IPR006456 -
Pte16g01285 420 NCBIfam homeobox domain, ZF-HD class 220 276 IPR006455 -
Pte16g01285 420 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 56 277 - -
Pte16g01285 420 SUPERFAMILY Homeodomain-like 206 275 IPR009057 -
Pte16g01285 420 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 120 IPR006456 -
Pte16g01285 420 MobiDBLite consensus disorder prediction 38 64 - -
Pte16g01285 420 Gene3D - 204 279 - -
Pte16g01285 420 MobiDBLite consensus disorder prediction 202 220 - -
Pte16g01285 420 Pfam ZF-HD protein dimerisation region 69 121 IPR006456 -
Pte16g01285 420 MobiDBLite consensus disorder prediction 1 24 - -
Pte16g01285 420 FunFam Zinc-finger homeodomain protein 2 208 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01285 Pte-Chr16 32437155 32441656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01285 12 289 ZF-HD Transcription Factor Family AT4G24660 44.245 2.04e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte16g01285 ZF-HD_dimer 2.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01285 - - pop:7468872 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g01285 16 32437155 32441656 Pte16g01285 16 32437155 32441656 RCT