Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01266 ATGGCACTCGAAGCCGTAGTGTTCCCTCAAGATCCATTCAACTATGGCTGCAAGGATTTGTACTTGGTAGAAGCTGTGGGAGGAGGAGGAGAAAGTACTGTTGGAACTTGGGGCCATGAGAATTTGCAAGATGAAGAGAAAGGCCTGCTGGGAATTTTTGACAACAATTACAACATACAAACTGGTGCAAATCTGCACGTGAATTGGGACTACTCTTCTTCTCCTTCAGTGCTTCAAAATGTGAAGGATCAATGCCACTGGGAAACAAATTCGTCCCCTGAAGCCTGTACAGGCACTCAGCATTCGCCGTCTCCACCAGAGTTCCCTCCATTAATGGAAACCGCTCTGCCCTCAGCCAGCCGGCGCAAACGTCGAAGAACTAGGAGCACAAAGAACAAGGAGGAAATTGAGAACCAGAGAATGACTCACATTGCTGTTGAGCGCAACAGGAGAAAACAGATGAATGAATACCTAGCTGTTCTTCGATCTTTGATGCCATCTTCATACGTTCAAAGGGGTGACCAAGCATCCATTATTGGAGGTGCAATAAATTTCGTGAAGGAGCTAGAGCAGCTACTGCAGTCTATGGAAGGCCATAGAAAATCAAAGGAACAGCCTAAAGACAATGACTCTTCTTCTCCACCATTTGCTGAGTTCTTCAGCTTTCCACAGTACTCAACACGCGCCACTCACGGTGATAGTACTTCTTCTGAAGCCAACACGGCCGCCACTGAGAAGGAGCCAATGAATCAGAACCAGTGGGCAGTGGCTGACATAGAAGTAACCATGGTGGACAGTCACGCCAACCTCAAGATACTCTCAAAGAAAAGACACAGGCAGCTACTGAAGATGGTTGTCGGATTCCAAAGCTTGAAACTCAGTATTCTACACCTAAATGTTACAACTGTTGAAGAAATGGTACTTTACTCAGTTAGCGTAAAGCTTGAGGAAGGGTGTCAGCTCAACACAGTGGACGAGATAGCAGCTGCTGTGAATCAACTATTGAACAGAATAATTCAAGAGGAAGCTGCTTTCAGCTAA 1041 0.4601 MALEAVVFPQDPFNYGCKDLYLVEAVGGGGESTVGTWGHENLQDEEKGLLGIFDNNYNIQTGANLHVNWDYSSSPSVLQNVKDQCHWETNSSPEACTGTQHSPSPPEFPPLMETALPSASRRKRRRTRSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMEGHRKSKEQPKDNDSSSPPFAEFFSFPQYSTRATHGDSTSSEANTAATEKEPMNQNQWAVADIEVTMVDSHANLKILSKKRHRQLLKMVVGFQSLKLSILHLNVTTVEEMVLYSVSVKLEEGCQLNTVDEIAAAVNQLLNRIIQEEAAFS* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01266 346 Gene3D - 128 205 IPR036638 GO:0046983
Pte16g01266 346 MobiDBLite consensus disorder prediction 89 137 - -
Pte16g01266 346 MobiDBLite consensus disorder prediction 228 249 - -
Pte16g01266 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 202 IPR036638 GO:0046983
Pte16g01266 346 SMART finulus 144 195 IPR011598 GO:0046983
Pte16g01266 346 FunFam Basic helix-loop-helix transcription factor 129 204 - -
Pte16g01266 346 CDD bHLH_AtFAMA_like 141 215 - -
Pte16g01266 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 189 IPR011598 GO:0046983
Pte16g01266 346 PANTHER MAX DIMERIZATION, MAD 92 343 - -
Pte16g01266 346 Pfam Helix-loop-helix DNA-binding domain 139 190 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01266 Pte-Chr16 32308112 32309714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01266 1 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.476 1.30e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte16g01266 HLH 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01266 - - qsa:O6P43_015344 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g01266 16 32308112 32309714 Pte16g01266 16 32308112 32309714 RCT