Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01259 ATGCAGACATTCAGAGATTCACATGCTTCGACTGATTTTATCCCTATCTGCCCATCGAAAGATTTTAAGCCGAGTTTTGAGAGTCATGATTACAGTGAAGAATTCCAGGCGCTGTTAGGTAGACTAGAGCAAGAAGATGGGAACGAAGAAACTAATGTGGTAGCAGAGAAGAAATGTCGGCGACTAAGTGTGAATCAGGTGAAGGCCTTGGAGAGAAATTTTGAGTTGGAAAACAAGCTAGAGCCAAAGCGGAAGTTGAAATTAGCTGAAGAATTAGGACTGCAACCTCGACAGGTTGCAATTTGGTTCCAAAACCGTAAAGCCCGATATAAGACAAAGATATTGGAACGAGATTATGGTATGTTAAAAGCCAGTTACGATGCATTGAAGCTCAACTATGTCAACCTTGAACAAGAGAGAGAAGTCCTATCATTCCAGTTAAGGGAGTTGAAAGAGAGATACTGTAACAGAATGGAAGGGAGGACGAAAGTGGTTAAAGAATTGAATGACAGCACTGAACTCAAGACTCAGAACCATATTGTGGATGGTGATGACAGCAGTGAGGGAGGCAATGGAAAACTGCGTGGCAAGGAAGAGCAGAGTGTAATAGGAAATTGTATCCATCGACACCATCCCAACTTATGA 645 0.4217 MQTFRDSHASTDFIPICPSKDFKPSFESHDYSEEFQALLGRLEQEDGNEETNVVAEKKCRRLSVNQVKALERNFELENKLEPKRKLKLAEELGLQPRQVAIWFQNRKARYKTKILERDYGMLKASYDALKLNYVNLEQEREVLSFQLRELKERYCNRMEGRTKVVKELNDSTELKTQNHIVDGDDSSEGGNGKLRGKEEQSVIGNCIHRHHPNL* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01259 214 Pfam Homeodomain 60 111 IPR001356 GO:0003677
Pte16g01259 214 CDD homeodomain 60 113 IPR001356 GO:0003677
Pte16g01259 214 Pfam Homeobox associated leucine zipper 114 153 IPR003106 GO:0006355|GO:0043565
Pte16g01259 214 MobiDBLite consensus disorder prediction 177 195 - -
Pte16g01259 214 Coils Coil 119 153 - -
Pte16g01259 214 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Pte16g01259 214 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Pte16g01259 214 FunFam homeobox-leucine zipper protein ATHB-6-like 61 107 - -
Pte16g01259 214 SUPERFAMILY Homeodomain-like 57 123 IPR009057 -
Pte16g01259 214 MobiDBLite consensus disorder prediction 177 199 - -
Pte16g01259 214 SMART HOX_1 56 117 IPR001356 GO:0003677
Pte16g01259 214 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Pte16g01259 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 45 172 IPR045224 GO:0003700
Pte16g01259 214 Gene3D - 61 111 - -
Pte16g01259 214 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01259 Pte-Chr16 32237209 32239103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01259 28 153 Homeobox Transcription Factor Family AT5G65310 58.594 2.56e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte16g01259 Homeodomain 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01259 K09338 - qsa:O6P43_015335 192.2