Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01246 ATGGCTTACACACAATATCGATCACCTTTTGGCGACACAACGTACACCAAAGTATTTGTTGGAGGACTAGCTTGGGAGACCCCCACAGAGGAAATGCGTAAATATTTTGAGCAGTTTGGGGAGATTCTTGAAGCTGTCATTATCACTGATAAGAGTACAGGAAATTCAAAAGGATATGGATTTGTAACTTTTCGTGATCCTGAATCAGCAAGAAGGGCTTGTGCTGATCCGAACCCTGTAATTGATGGAAGAAGAGCAAACTGTAACATTGCTTCCTTTGGACGCCCTCGACCTTCACCACCTCGAGGAAGAAATGTGGTTCCAATTAGTGGGAGCTACCAAGTAGGAACAGGGCAGGTTGGACCATCTTACAGTGGTGGAGTTCCGGCACCATTGCCTCCACCATTACCACCACCTCCGCCGCCGTTCGTATACCCACCACCCTATGGTTATCAGACTTACACTCCTGATTATGGATACCAACAGGCCACTCTCTACAACCCACAGATTCAACAGCCACAATATTATCCCCAGATGTATGGAACTTCATCATCCATGGGCTCTCCATATTACTATGGCTATACCCTCCAAGCTCCAAGGGGAACGTTTTCAACGCCCCAAGGGCATCATCGTCCAGCTGGACCATCGTCCTATGTATACTACCCTGCACCATTGGAAGGCTCCTTCTCTACATATCCTATACATTTACATTCACCAACGTCAAGATTCCCCTTTCCTTCCACTGTCACAGATTCTGAAAATCCTCAACGCACGTCCATGGGACCAGAAAGTGGAGCTGTAACTTCTGAAAGTTCAAATCCATGA 825 0.4667 MAYTQYRSPFGDTTYTKVFVGGLAWETPTEEMRKYFEQFGEILEAVIITDKSTGNSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASFGRPRPSPPRGRNVVPISGSYQVGTGQVGPSYSGGVPAPLPPPLPPPPPPFVYPPPYGYQTYTPDYGYQQATLYNPQIQQPQYYPQMYGTSSSMGSPYYYGYTLQAPRGTFSTPQGHHRPAGPSSYVYYPAPLEGSFSTYPIHLHSPTSRFPFPSTVTDSENPQRTSMGPESGAVTSESSNP* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01246 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Pte16g01246 274 Gene3D - 4 106 IPR012677 -
Pte16g01246 274 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Pte16g01246 274 SMART rrm1_1 17 89 IPR000504 GO:0003723
Pte16g01246 274 PANTHER BOULE-RELATED 7 248 - -
Pte16g01246 274 FunFam RNA-binding protein 24-B isoform X1 3 111 - -
Pte16g01246 274 MobiDBLite consensus disorder prediction 239 274 - -
Pte16g01246 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Pte16g01246 274 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01246 Pte-Chr16 32139188 32142981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01246 12 92 C2H2 Transcription Factor Family AT2G19380 40.741 3.53e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01246 K25006 - tcc:18592140 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g01246 16 32139188 32142981 Pte16g01246 16 32139188 32142981 RCT