Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01235 ATGGGAAGGTCACCTTGCTGCGATGAGAGTGGCCTCAAGAAAGGACCCTGGACTCCTGAGGAGGATGAAAAGCTTGTCCAATACATTAGGATACATGGCCATGGAAGTTGGAGAGCTCTTCCAAAGCTAGCTGGTCTTAGTCGATGTGGCAAAAGCTGTAGGTTAAGATGGACAAACTATTTGAGGCCAGATATTAAGAGAGGAAAGTTTTCTCAAGAAGAGCAGCAAACTATTCTGCATCTCCATTCCATTCTCGGAAACAAGTGGTCGGCAATTGCAAGCCACCTTCCTGGTCGAACTGACAATGAAATCAAGAATTTCTGGAATACTCATCTCAAGAAGAAGTTGATTCAAATGGGGTTTGATCCAATGACTCATCAGCCTAGAATTGACCTCTTTTCAAGTTTGCCTTGCTTGCTTGCCTTGGCCAACATGAAGAAACTCATGGATCATAATCATAATGATCAGTCACTAGATGAACAGGCTTTGAGATTGCAAGCCGAGGCTGTCCAATTAACCAAGCTTCAGTATCTGGAGTATCTTCTACAGTCCTCAACTTCTCTCAACACCAAAAGGACGTCGTATGACCTGAATAGCATACCAAACATGGAAGCAGCTTTGAATATGTTGAACCCAATTTCTTTTCCAGTAATGCAGAAAGAGAGTTCAATGAATATAAATTCCTCGCAATACCCAGAGAATAACATGCAGACTTCCTTTTCATTTGAAAACGGAGACTCTCAACCTCAACCACTCCACCAGCCAATCCTACTATCCCACTTTCCAGACCCACAAGTCCCTTTCAGTGTCCAAACATGTTTGAATAGTAGTGAGATATTAGGCCAAGTCACGGACTTCACAATGGTCAGCCAAGGGAACTGCCCATCTAATGACACTGATCACTGGGCGATCAATACTTCTCCTGCTGCTCCTAGTGTTCCTCCTACTTTGGCTCCAAGCCCCATAAGCAGTAGTTCAAGCTACGGTACTGGAGGGACCTTATCATCCTACTGGTCTCAACAATTTTTAGACGACATTGATATTATGCACGAGATTGCTTAG 1062 0.4369 MGRSPCCDESGLKKGPWTPEEDEKLVQYIRIHGHGSWRALPKLAGLSRCGKSCRLRWTNYLRPDIKRGKFSQEEQQTILHLHSILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRIDLFSSLPCLLALANMKKLMDHNHNDQSLDEQALRLQAEAVQLTKLQYLEYLLQSSTSLNTKRTSYDLNSIPNMEAALNMLNPISFPVMQKESSMNINSSQYPENNMQTSFSFENGDSQPQPLHQPILLSHFPDPQVPFSVQTCLNSSEILGQVTDFTMVSQGNCPSNDTDHWAINTSPAAPSVPPTLAPSPISSSSSYGTGGTLSSYWSQQFLDDIDIMHEIA* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01235 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte16g01235 353 CDD SANT 69 112 IPR001005 -
Pte16g01235 353 FunFam MYB-related transcription factor 13 66 - -
Pte16g01235 353 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte16g01235 353 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte16g01235 353 CDD SANT 16 61 IPR001005 -
Pte16g01235 353 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte16g01235 353 FunFam Transcription factor MYB39 69 130 - -
Pte16g01235 353 SMART sant 66 114 IPR001005 -
Pte16g01235 353 SMART sant 13 63 IPR001005 -
Pte16g01235 353 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 233 - -
Pte16g01235 353 Gene3D - 11 67 - -
Pte16g01235 353 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte16g01235 353 Gene3D - 69 116 - -
Pte16g01235 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte16g01235 353 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01235 Pte-Chr16 32045000 32046526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01235 1 345 MYB Transcription Factor Family AT1G34670 52.589 8.00e-109 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte16g01235 Myb_DNA-binding 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01235 K09422 - jre:109006816 430.254