Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01222 ATGGATTTTGTTCTGAATTCTAATGATATGTATTTCTGGGTTTTGCAGTTTCAACACCCTCCAGCTTTGAGCAAATTTGATGAGATAACAACGGAAATGAAAGATAAACAGATTGTAATGTTTTTAGATTATGACGGAACACTCTCTCCAATTGTATCTGACCCTGACAAAGCATTCATGACTAAAAAGATGAGAGCAGCTGTAAAGGACATCGCTAGGCATTTCCCCACAGCCATAGTGAGTGGGAGATGCAAGGACAAGGTGTTCAACTTCATAAAACTGGCAGAGCTTTACTATGCTGGCAGCCATGGAATGGACATCCAAGGGCCAACCAAGAATCACCATAATCACAAAAAAAGTAATCAGCCACTCATCTTTCAACCAGCTAATGAGTTCTTAACCATGATGGATGAGGTCTATGAAGTCTTGCAAAAGAGAACAAAATCTGTGCCGGGAGCTTACGTAGAGAATAACAAGTATTGTTTATCAGTGCATTTTCGATGTGTTGATGAAAAGAGTTGGGCATCATTGGCTGAGCAAGTTAGATCAGTACTCGACGAGTATCCCAAACTTAGGTTGACCCAAGGGAGAAAGGTACTTGAGATTCGTCCAACCATCAAATGGGACAAAGGGAAAGCTCTTGAATTTTTGTTGGAGTCATTAGGTTATTCAAACTCCAATGATGTCTTTCCTATTTATATTGGTGATGATCAAACCGACGAAGATGCATTTAAGGTTTTGCGCAATAGAGGGCAAGGGATGGGTATCCTTGTTTCCAAAATCCCAAAAGAAACCATGGCTTCTTACACACTACAGGACCCATCGGAGGTTGAGCAGTTTTTGCGGCGTATGGTGGAGGCAGTAGGGAGGAAAGTACAGTAG 882 0.4138 MDFVLNSNDMYFWVLQFQHPPALSKFDEITTEMKDKQIVMFLDYDGTLSPIVSDPDKAFMTKKMRAAVKDIARHFPTAIVSGRCKDKVFNFIKLAELYYAGSHGMDIQGPTKNHHNHKKSNQPLIFQPANEFLTMMDEVYEVLQKRTKSVPGAYVENNKYCLSVHFRCVDEKSWASLAEQVRSVLDEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGYSNSNDVFPIYIGDDQTDEDAFKVLRNRGQGMGILVSKIPKETMASYTLQDPSEVEQFLRRMVEAVGRKVQ* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01222 293 Gene3D - 119 205 - -
Pte16g01222 293 FunFam Trehalose 6-phosphate phosphatase 135 293 - -
Pte16g01222 293 Pfam Trehalose-phosphatase 41 275 IPR003337 GO:0003824|GO:0005992
Pte16g01222 293 NCBIfam HAD-IIB family hydrolase 40 249 IPR006379 -
Pte16g01222 293 SUPERFAMILY HAD-like 39 285 IPR036412 -
Pte16g01222 293 FunFam Trehalose 6-phosphate phosphatase 38 125 - -
Pte16g01222 293 CDD HAD_TPP 39 277 - -
Pte16g01222 293 Gene3D - 40 271 IPR023214 -
Pte16g01222 293 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 13 286 IPR044651 GO:0004805|GO:0005992
Pte16g01222 293 FunFam Trehalose 6-phosphate phosphatase 129 205 - -
Pte16g01222 293 NCBIfam trehalose-phosphatase 36 285 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01222 Pte-Chr16 31946709 31948567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01222 34 281 Trehalose Biosynthesis Gene Families AT1G70290 25.681 6.81e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01222 K01087 - qsa:O6P43_015290 441.425