LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte16g01219	ATGGCTGCTGCAATGGATTTCTACAATTCTACCAGTACTGTTGAGTCAGATCCTATGAGAGGTGAGCTCATGGAAGCACTTGAACCTTTTATGAAGAGTTCTTCCACAAACAGCTTTATCTCCCCTAGTGAAACTTCATCTCTTTCACCAAGTATGCCCCGTTATTATGTACCTTCAACCTCTTATTCTCCTTCATGTAATTACCTTTCTTCTTCATACACTTCTCCACCCACCCAGTCCAGTTTGTATCCAACTGTTTGCTCCACCTCGTTGAACCCTAATATTTCAGATGGGTTCTCGAATAGCCAAACCCTCTTAGGCGTTGAGCAATCAAGTTCACTAATTGGACTGAACCACCTTACCTCATATCAGATGAACCAGATTCAAGCTCAGATCCATTTTCAGAATCGACAAAGTCAAAACCTCTCCTGTCAACAAAGCCACTATAAATCACATCAGCCTAATTTTAGCTTTCTCAACCCTAAACCTGTTCTCATGAAGCTAACTGGTTCACCACCCAAACCAACTAAGCTCTACAGAGGAGTCAGGCAACGACATTGGGGGAAGTGGGTAGCTGAGATCAGACTCCCAAGGAATCGTACCCGTCTTTGGCTCGGTACTTTTGACACTGCTGAAGAAGCCGCTCTGGCGTATGACAAGGCCGCTTACAAGCTCAGAGGCGACTTTGCGAGGCTGAATTTCCCCAATCTCCGACACAAAGGATCAATTGTTGGAGGGGATTTCGGGGAGTACAAGCCTCTTCCTTCCTCTGTTGATGCGAAGCTCGAAGCTATTTGTGAAAACTTAGCTGACATGCAGAAACAAGGGAAGTCAGAGAAGTCTAGATGCTCTTCTAAGAGGTCTAGTACAGGGCGGTCCAAGCTGGATCATAAGGCAGCAAAAAAGGCTCAGTCGCAGATGGTGTCAAGTTCTCTGGAGGAGAATTCGGTGGTGACCGATGGGGAGGTGAAGGTTTCTGAAAGCTGTTACAAGGTTGAGGTCTCCTCGTCACCGGTTTTCTCCGAGAGTGATGGGTCTGCAGGCTCTTCACCTTTGTCAGAACTCACTTTTCCTTATGTTACTGAGTTCCAATGGGATAATATGGGTGCTTCAGACGATTTCATGCTGGAGAAGTGCCCTTCGTATGAGATTGATTGGGCGTCTCTGTGA	1170	0.4615	MAAAMDFYNSTSTVESDPMRGELMEALEPFMKSSSTNSFISPSETSSLSPSMPRYYVPSTSYSPSCNYLSSSYTSPPTQSSLYPTVCSTSLNPNISDGFSNSQTLLGVEQSSSLIGLNHLTSYQMNQIQAQIHFQNRQSQNLSCQQSHYKSHQPNFSFLNPKPVLMKLTGSPPKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHKGSIVGGDFGEYKPLPSSVDAKLEAICENLADMQKQGKSEKSRCSSKRSSTGRSKLDHKAAKKAQSQMVSSSLEENSVVTDGEVKVSESCYKVEVSSSPVFSESDGSAGSSPLSELTFPYVTEFQWDNMGASDDFMLEKCPSYEIDWASL*	390

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte16g01219	389	FunFam	Ethylene-responsive transcription factor 2	177	236	-	-
	Pte16g01219	389	ProSiteProfiles	AP2/ERF domain profile.	178	235	IPR001471	GO:0003700\|GO:0006355
	Pte16g01219	389	SMART	rav1_2	178	241	IPR001471	GO:0003700\|GO:0006355
	Pte16g01219	389	MobiDBLite	consensus disorder prediction	276	301	-	-
	Pte16g01219	389	CDD	AP2	177	237	IPR001471	GO:0003700\|GO:0006355
	Pte16g01219	389	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	3	389	-	-
	Pte16g01219	389	PRINTS	Ethylene responsive element binding protein signature	179	190	IPR001471	GO:0003700\|GO:0006355
	Pte16g01219	389	PRINTS	Ethylene responsive element binding protein signature	201	217	IPR001471	GO:0003700\|GO:0006355
	Pte16g01219	389	Pfam	AP2 domain	179	227	IPR001471	GO:0003700\|GO:0006355
	Pte16g01219	389	Gene3D	AP2/ERF domain	178	236	IPR036955	GO:0003700\|GO:0006355
	Pte16g01219	389	MobiDBLite	consensus disorder prediction	276	314	-	-
	Pte16g01219	389	SUPERFAMILY	DNA-binding domain	178	236	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte16g01219	Pte-Chr16	31930683	31932739	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte16g01219	1	389	AP2-EREBP Transcription Factor Family	AT1G78080	47.202	5.30e-96	288

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Pte16g01219		AP2	5.3e-15	CL0081