Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01219 ATGGCTGCTGCAATGGATTTCTACAATTCTACCAGTACTGTTGAGTCAGATCCTATGAGAGGTGAGCTCATGGAAGCACTTGAACCTTTTATGAAGAGTTCTTCCACAAACAGCTTTATCTCCCCTAGTGAAACTTCATCTCTTTCACCAAGTATGCCCCGTTATTATGTACCTTCAACCTCTTATTCTCCTTCATGTAATTACCTTTCTTCTTCATACACTTCTCCACCCACCCAGTCCAGTTTGTATCCAACTGTTTGCTCCACCTCGTTGAACCCTAATATTTCAGATGGGTTCTCGAATAGCCAAACCCTCTTAGGCGTTGAGCAATCAAGTTCACTAATTGGACTGAACCACCTTACCTCATATCAGATGAACCAGATTCAAGCTCAGATCCATTTTCAGAATCGACAAAGTCAAAACCTCTCCTGTCAACAAAGCCACTATAAATCACATCAGCCTAATTTTAGCTTTCTCAACCCTAAACCTGTTCTCATGAAGCTAACTGGTTCACCACCCAAACCAACTAAGCTCTACAGAGGAGTCAGGCAACGACATTGGGGGAAGTGGGTAGCTGAGATCAGACTCCCAAGGAATCGTACCCGTCTTTGGCTCGGTACTTTTGACACTGCTGAAGAAGCCGCTCTGGCGTATGACAAGGCCGCTTACAAGCTCAGAGGCGACTTTGCGAGGCTGAATTTCCCCAATCTCCGACACAAAGGATCAATTGTTGGAGGGGATTTCGGGGAGTACAAGCCTCTTCCTTCCTCTGTTGATGCGAAGCTCGAAGCTATTTGTGAAAACTTAGCTGACATGCAGAAACAAGGGAAGTCAGAGAAGTCTAGATGCTCTTCTAAGAGGTCTAGTACAGGGCGGTCCAAGCTGGATCATAAGGCAGCAAAAAAGGCTCAGTCGCAGATGGTGTCAAGTTCTCTGGAGGAGAATTCGGTGGTGACCGATGGGGAGGTGAAGGTTTCTGAAAGCTGTTACAAGGTTGAGGTCTCCTCGTCACCGGTTTTCTCCGAGAGTGATGGGTCTGCAGGCTCTTCACCTTTGTCAGAACTCACTTTTCCTTATGTTACTGAGTTCCAATGGGATAATATGGGTGCTTCAGACGATTTCATGCTGGAGAAGTGCCCTTCGTATGAGATTGATTGGGCGTCTCTGTGA 1170 0.4615 MAAAMDFYNSTSTVESDPMRGELMEALEPFMKSSSTNSFISPSETSSLSPSMPRYYVPSTSYSPSCNYLSSSYTSPPTQSSLYPTVCSTSLNPNISDGFSNSQTLLGVEQSSSLIGLNHLTSYQMNQIQAQIHFQNRQSQNLSCQQSHYKSHQPNFSFLNPKPVLMKLTGSPPKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHKGSIVGGDFGEYKPLPSSVDAKLEAICENLADMQKQGKSEKSRCSSKRSSTGRSKLDHKAAKKAQSQMVSSSLEENSVVTDGEVKVSESCYKVEVSSSPVFSESDGSAGSSPLSELTFPYVTEFQWDNMGASDDFMLEKCPSYEIDWASL* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01219 389 FunFam Ethylene-responsive transcription factor 2 177 236 - -
Pte16g01219 389 ProSiteProfiles AP2/ERF domain profile. 178 235 IPR001471 GO:0003700|GO:0006355
Pte16g01219 389 SMART rav1_2 178 241 IPR001471 GO:0003700|GO:0006355
Pte16g01219 389 MobiDBLite consensus disorder prediction 276 301 - -
Pte16g01219 389 CDD AP2 177 237 IPR001471 GO:0003700|GO:0006355
Pte16g01219 389 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 389 - -
Pte16g01219 389 PRINTS Ethylene responsive element binding protein signature 179 190 IPR001471 GO:0003700|GO:0006355
Pte16g01219 389 PRINTS Ethylene responsive element binding protein signature 201 217 IPR001471 GO:0003700|GO:0006355
Pte16g01219 389 Pfam AP2 domain 179 227 IPR001471 GO:0003700|GO:0006355
Pte16g01219 389 Gene3D AP2/ERF domain 178 236 IPR036955 GO:0003700|GO:0006355
Pte16g01219 389 MobiDBLite consensus disorder prediction 276 314 - -
Pte16g01219 389 SUPERFAMILY DNA-binding domain 178 236 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01219 Pte-Chr16 31930683 31932739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01219 1 389 AP2-EREBP Transcription Factor Family AT1G78080 47.202 5.30e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte16g01219 AP2 5.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01219 K09286 - qsa:O6P43_015285 444.506