Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01200 ATGAGCCTGCCGTCTACTCAACTTGTTATGTCAAGAGAAATGGGTATATGTGCGCCACTCCACCAGGTTTGCATGTGGAGTGACACCTTTAGAGGTGATGACACTCTAAACCGTAGTCCCCCCACATTCTTACCTGTCAATATTGTGATGGATAACAGCAACGTAAGACAGCCTTCAGAACTTATTCCCAATGCACCAAGTCTACCTTCTGGGAGTGATCAAGAAGCAGATAAGCCTGTTGATAAGGTGAAAAGAAGGCTGGCACAAAATCGTGAAGCTGCTCGAAGAAGTCGGTTAAGGAAAAAGGCATATGTTAAACAATTAGAGACCAGCCGTATGAAGCTTATTCAATTGGAGATGGAAATTCACAAAACTAGAAAGCAGAGTCTTTACCTGGGCCGTGCACTAGATGCCAGTCATCTGGGGATATCTGGAACTTTGAACAAAGGTGTTGCTGTTTTTGAGATTGACTATGGAAATTGGGCTGAAGAGCAAAATAGACAGAACTCTCATTTTAGAAATGCATTACAAGCTCATCTCCCTGATTTGCAGCTCCATATACTAGTTGAAAACTGCTTGAACCACTATGGCAGCCTTTTCCGAATGAAAGCAGACGCTGCAAAGGCAGACGTCTTCTATGTTATCTCCGGTGCATGGAGGACACCCTTAGAATGCTTCTTTCTTTGGATTGGAGGACCCCGTCCTTCAGAACTTCTGAATGTTGTCTTGCCACAACTGGAGCCGCCATTGACTGAACAGCAACTTGTCAGTATCAAAAATCTTCGCCACTCAACTCAGCAAGCTGAAGACGCTCTCTCTCAGGGATGGGATAAGCTGCAGCAGGTTCTGGCTCAAAGCATAGCTGTAGATGCTATTCTTGCTGAAGACTACGGATCCCAAACAGCTGCTTCGGTTGATAAGGAAGCACTTGAAGGGTTTGTCAACCAGGCAGATCACTTGAGACAACAGTCTCTACAACACATGTCTCGCATCCTGACAACCCACCAAGCTGCAAGAGGGCTGCTTGCTCTAGGAGAGTACTTTCAGCGTCTCCGAGGCCTGAGTTCTCTTTGGGGTTCTCGTACTTCCAAAATTCCAGCTGCCTTGTAA 1110 0.4586 MSLPSTQLVMSREMGICAPLHQVCMWSDTFRGDDTLNRSPPTFLPVNIVMDNSNVRQPSELIPNAPSLPSGSDQEADKPVDKVKRRLAQNREAARRSRLRKKAYVKQLETSRMKLIQLEMEIHKTRKQSLYLGRALDASHLGISGTLNKGVAVFEIDYGNWAEEQNRQNSHFRNALQAHLPDLQLHILVENCLNHYGSLFRMKADAAKADVFYVISGAWRTPLECFFLWIGGPRPSELLNVVLPQLEPPLTEQQLVSIKNLRHSTQQAEDALSQGWDKLQQVLAQSIAVDAILAEDYGSQTAASVDKEALEGFVNQADHLRQQSLQHMSRILTTHQAARGLLALGEYFQRLRGLSSLWGSRTSKIPAAL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01200 369 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 85 100 IPR004827 GO:0003700|GO:0006355
Pte16g01200 369 ProSiteProfiles DOG1 domain profile. 151 361 IPR025422 GO:0006351|GO:0043565
Pte16g01200 369 SMART brlzneu 78 138 IPR004827 GO:0003700|GO:0006355
Pte16g01200 369 Gene3D - 81 136 - -
Pte16g01200 369 MobiDBLite consensus disorder prediction 57 71 - -
Pte16g01200 369 Coils Coil 108 128 - -
Pte16g01200 369 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 80 115 IPR004827 GO:0003700|GO:0006355
Pte16g01200 369 FunFam BZIP family transcription factor 81 130 - -
Pte16g01200 369 Pfam Seed dormancy control 170 243 IPR025422 GO:0006351|GO:0043565
Pte16g01200 369 Pfam bZIP transcription factor 81 121 IPR004827 GO:0003700|GO:0006355
Pte16g01200 369 PANTHER TRANSCRIPTION FACTOR TGA9 6 362 - -
Pte16g01200 369 MobiDBLite consensus disorder prediction 57 81 - -
Pte16g01200 369 SUPERFAMILY Leucine zipper domain 83 125 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01200 Pte-Chr16 31750316 31755734 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01200 6 361 Calmodulin-binding Proteins AT1G77920 54.891 2.30e-133 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pte16g01200 DOG1 3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01200 K14431 - qsa:O6P43_019693 456.447