Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01193 ATGCCTCTGCCTCCGCCGCGGAAGCAGCAACCACCGCTGACGACACAGCTCCGTCGTCTTGACCCGAAGATCTGGCGTGCTTGTGCGGGTTCCTCTGTTCCAATTCCGTCTGTGCAATCTAGGGTTTATTACTTTCCTCAGGGACATTTGGAGCACGCGTCTTCTCCTCCTCAGTTCCTGTCTCCTCTTGTGCTCTCAAAGCCTTGTATTCATTGCCGAATTTCCGAAGTTAACCTCCTCGCCGATCCTGTCACCGATGAGGTTTTCGCTAAGCTTGTGCTTATTCCTATTTCTAATTTCAACTCTGCACCGTACCAGAATCGTGGTTACCTGGACGAGTTGCCGGAAGTGAACGACGCTGATGACAAGGTCTTGGCATTTGCTAAGATTCTCACACCTTCCGATGCTAATAATGGCGGCGGATTCTCTGTTCCGCGGTTCTGTGCGGACTCTATTTTCCCGCCACTGAACTTCCAGGCCGACCCGCCGGTGCAGACGTTGACGGTGACAGATGTTCACGGCATTGTTTGGGAGTTTAGACACATTTACAGGGGAACGCCGAGAAGGCACTTGCTTACTACTGGATGGAGTAAGTTCGTGAATCATAAGAAGTTGGTGGCGGGTGACTCCGTGGTCTTCATGAAGAATTTGAAGGGAGAGATGTTCATTGGGGTTCGTAGGTCTGTGCGGTTCCATGCTACCAATGGTCCTGATTACACGAGTTGGTATCCTCAACCTCCGGTTGCAGGGATGAGAAATAATTTGGAGGACGATCCAAACCAGGAAGAGGACTGCAACAGTCTCGGAGCAAGGGACCCATTCTCCAGAAATGGGAGAGGCAAATTGTCTGCCAAGGCTGTCGCTGATGCTGCAGAGTTAGCGGTTAATGATATGCCGTTCGAGGTTGTGTATTATCCTAGAGCCGGTTGGTCGGACTTTGTAGTGAAGGCGGAGTTGGTTGAGGCTGCGACGAAAGTGTACTGGACACCCGGAATGAGAGTGAAAATGGCTGTGGAGACCGAGGACTCGTCCAGGACGACATTTTTCCAGGGGACCGTAGCAACTGCTGCACTTCCTGATGTAGGGCCATGGAAGGGTTCTCCGTGGCGCTTACTTCAGGTGAATTGGGATGAACCTGAAGTGCTGCAGCATTCCAAGCGGGTTAGCCCTTGGCAAGTTGAATATGTTTCACCTGCGCCACAAATTCAAACAGGATATCCACCGGCAAAAAAATTCAGAGCTCCAAATAATTTAGGAGCCGTAGCTGATGGAGAGGGAGACCCATTCTTCCCGATAACAGGGTTTACTAATTCAACAGTGGGAAGCTTAAGGCAATCGTTGTTGAATTATGACAATGTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCAATTTTCTATTTCTAATGTATCCAGCTATACAAGAGACAGTACTCCACATCTGGGCACAACACATTTCTCTAGAAACAATTTGGCGTCTCATTTGAGAACTGTATCAACAGATCTTAACATTGGCAGTTGTCAATCGGACAACTTATCACCAGACAGTCAGAGTAGTGTACATTGCTTCAGCACAGAATTTGTTGGTGCCCATTGTTGCAGCTTAACAAAACCTGCAGCTTGTACAATTCAGTTGTTCGGCAAGGTCATTCATACGAAACAGCCAAGTGCAACTGATTTTGAAGGCCTCGCAAGAGACAGAGACCCTAAAGGCCACAGTGTAACTGAAGTTGAAGGCGGCCAACTAGATCTTTCTTTGACTTGTACAAAATTACTTGACAGTATGGATTCTCAATGCCAAAGGAACTCCACTGTTGAGGCTTTCTATCTGTGA 1833 0.4861 MPLPPPRKQQPPLTTQLRRLDPKIWRACAGSSVPIPSVQSRVYYFPQGHLEHASSPPQFLSPLVLSKPCIHCRISEVNLLADPVTDEVFAKLVLIPISNFNSAPYQNRGYLDELPEVNDADDKVLAFAKILTPSDANNGGGFSVPRFCADSIFPPLNFQADPPVQTLTVTDVHGIVWEFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDSVVFMKNLKGEMFIGVRRSVRFHATNGPDYTSWYPQPPVAGMRNNLEDDPNQEEDCNSLGARDPFSRNGRGKLSAKAVADAAELAVNDMPFEVVYYPRAGWSDFVVKAELVEAATKVYWTPGMRVKMAVETEDSSRTTFFQGTVATAALPDVGPWKGSPWRLLQVNWDEPEVLQHSKRVSPWQVEYVSPAPQIQTGYPPAKKFRAPNNLGAVADGEGDPFFPITGFTNSTVGSLRQSLLNYDNVPAGMQGARHDQFSISNVSSYTRDSTPHLGTTHFSRNNLASHLRTVSTDLNIGSCQSDNLSPDSQSSVHCFSTEFVGAHCCSLTKPAACTIQLFGKVIHTKQPSATDFEGLARDRDPKGHSVTEVEGGQLDLSLTCTKLLDSMDSQCQRNSTVEAFYL* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01193 610 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Pte16g01193 610 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 563 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte16g01193 610 Gene3D - 124 229 IPR015300 -
Pte16g01193 610 SUPERFAMILY DNA-binding pseudobarrel domain 122 240 IPR015300 -
Pte16g01193 610 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Pte16g01193 610 CDD B3_DNA 127 227 IPR003340 GO:0003677
Pte16g01193 610 Gene3D - 328 400 - -
Pte16g01193 610 Pfam Auxin response factor 290 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte16g01193 610 SMART B3_2 127 229 IPR003340 GO:0003677
Pte16g01193 610 FunFam Auxin response factor 125 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01193 Pte-Chr16 31680863 31685414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01193 18 585 B3 DNA Binding Superfamily AT1G77850 50.000 4.33e-175 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte16g01193 B3 3.7e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01193 - - qsa:O6P43_019702 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g01193 16 31680863 31685414 Pte16g01193 16 31680863 31685414 RCT