Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01184 ATGCGTTGGTGGTGGTGCACGGTGTTGTTGTCGGTGATGACCGGAGAACGATTTAGTCGCCGGAAAAAGATGATGGGTCAGGGCGAGGAAGTTGGTTGTGGCGCCGAGGAGAGACCATGCCCGGCTTCTAGGGTTCCGGCCAAACTTCCAACGGAGAGTTGTAGGTTGGGGTTGAAAGCGAAAGAGGACACTGGTTCTCCCGGGATTGATTTTTATTCTCAGGCGAGGAAAGCGCTTTGTGAGCGTTCGCCTTTCGATGTGGCGGTGGAGTCTACTTCCGGTTCAGTTAGTGTAACTACTTTGCCCAGTGGTTTGGCCAGCTCATTGAATAGGCACTCTGAGAGAAGGAGACGTCCCAGGAAGTCTCATTCAGGATCCGACAAGAAATCTTCTAGAGGAGGGGATAGGTCGCGGGGTAATAGTATTTGGGTGGAGACAGAGGAGTACTTCAGAAACTTGTCACTGCCCGACATCGACCATATATTCCAGCTATCTTCTTTTAGTGATTTAGCAACTAGAAAGTGTTTTTCCATTCCCCATTTGGAACATCGGCCTAGTACTTCCAATGCAGATGAGGTTGTTAGTGCCAGTGAGATTACTAGAAATGAGAATGTTGATCATGTCAAAAATGAGGATACTTCCATGACAATTGATAATACTGGAGGTGATTTTTCGCCTTCTGTTTACAAAGAATGTTCTAGTTTAGGATGGTTGTTAGGTTGTAGGAATAAGATATCTTTGGCTTCTGAGCGCCCTTCTAAGAAGAGGAAGCTTTTGGGTTGTGATGCAGGGCTAGACAAAGTTTTAATTGCCCGTCCTTGTGAAGGCGATTCTTCTTTATGCCATTATTGTAGCACTGGGGATTCCGGTAATAAGACAAGTGATTTAATTGTTTGCAGTACTTGTAAGGTAGCAGTCCATAGAAAGTGCTACGGTGTGAAAGATGGTGCCGATGAACCCTGGTTATGTGCCTGGTGTAAACAAAACGATGGCGCTGGCCCTGTTGGTGATTCAGTGAGTACTTGTGTGCTTTGTCCTAAGAAGGGTGGTGCTCTGAAGCCTGCTTATAAAAATGTTGAAGATGGTGGATCAGTAAAATATGCACATTTGTTTTGCTGTTTGTGGATGCCCGAGGTGTATATAGAGGATCTTACTCGAATGGAGCCTATTATGAATATAAGTGGAATCAAGGAAGCACGCAGAAAATTGGTCTGTAACGTATGCAAGGTGAAGTGTGGTGCCTGTGTTCGGTGCAGCAATGGGGCATGTAGGACTTCTTTTCATCCAATATGTGCAAGAGAGGCAAAGCATAGAATGGAGGTTTGGGCAAAACATGGGAATGGCGATGTTGAGTTGAGGGCATTTTGCTCAAAACATACAGAAACACCAGACAATGTTATTCTCAGGTCTGGCAATTCTTTACCATCTGGTGGTCCTGATAAATTTGGGGGCATGGGGGTCTCTATGGAGGCTTCCGATAAATTTGACGGCAGTGATAGTGAGTCACAGGAGACACTATTATCTGCATCTAAATCAAATGCCATGATCATGATCGAAGGTGATGGTAGACAGCATATTAGTGATGCTGTGGGGCTGGTTGGGAAAAGCCACGAGGATGTTTATCCCTCTGACTCTGTTCATTTTACTATTGTTTTGAAGAAGTTAATTGACCTTGGAAAAGTCGATGTCAAGGATGTAGCTCTAGACGTTGGCATCTCACCAGAGTTATTGATTGCAAATCTTTCTGATGATTGTGTCTCCCCTGAAGTGAGATTCAAGATAGTAACTTGGCTCAAAAATCATGCATATATGAATACATTTCAGAGAAACTTGAGGTCCAGAGTGAAACCAGTCAATTCACACAAAGATGAAATTGGAGATTACATTTGTGATAGTTTAGCTGTATCAGGATCTGACATCATGGATCCTGTTGCTGTTAAGTCTGTACCTCCAAGGAGGCGGACTACAAACAAGATAAGGCTTTTGAAGGATAACAACTTAAAGTCCTCAGGAGATGCAATTTCTAGAGATGTGTTGCATATGGAAGATTGTGAAGCTGATCAACCTGTCATATCTTCTCCTGACAATATGTCCACGAGGCCTGAGAACTCTCGAGCACCTCTTGCAAACAACAGTTCGGATAAACCCTGCAATAGCAGTATGTCTGAAAGGGTTGTAGAAGACGAAGCTGCTACGTCTATGAAGAATTCTGTTGGTGGTACAGATCTATGCTGTCTAGATGCTACAGCTACAAAAACAGCTGGCTCTGCTTTCATAAGTACAGAATTGGTCACTAGTTACATTCATCCTTATGTTAGTGAAAAATTGATGCAAATTCAGAATTGGGCCCCACTAGAATCCATAAGACATTCATGGAAAGGTGATCCCTCTACTGTGGACGGTGTCTTCTGTGATAACCATGATCATCATTCAGAAAATCATGGAGCTGTTACTTGCAACGATCAATCTAATGCAGAACAATTAATCTTAGCTAGGAAAATGAAATTGCTGGAATCTTGTCCAGAAGATGAAGTCGAAGGGGAGATTGTTTACTTCCAGCATAGCTTAATTTCAAATTTAGCTGCAAGGAAACAATTATCTGATAATCTTATATGTAATGTGGTCAAGAGACTTCCACTGGAGATTGATGCAACTCGGCAACAACAATGGGATGCTGTGCTTGTAAATCAGTATCTTAGTGATCTTAAGGAGGCTAAGAAACAAGGTAGAAAAGAAAGAAGGCACAAAGAAGCGCAGGCGGTGCTAGCTGCTGCAACTGCTGCTGCTGCTAATTCTTCCAGGAATTCTTCATTTAGGAAGGATGCTTTGGATGAATCTGCACCACATGAGAATATGTTCAAGATAGATGCTTCAAATGGAAGATCTGGTGTTTCTTCTCAGTTGTTGCCAAGAGCCAGAGAGACACTTTCAAGGGTAGCTGTTACATGTAATTCAACTGAAAAGCATTCTGGACTTGGTATAACAGAGTTAGATCATTCAAGAGAACACCCTAGATCATGTGACATTTGCAGACGGTCTGAAACAATAAACCCTATTTTGATCTGTTCCAGTTGCAAGGTTGCTGTTCACTTGGATTGCTATCGAAGTGTGAGAGAATCTATTGGTCCATGGTACTGTGAATTATGCGAAAGTGTGGCTTACAGAACCTCGGGAGTTCCAGCTGTCAATTTTTGGGAGAATCCTCCTTTTATAGTGGAATGTGGTTTGTGTGGTGGCACTACTGGTGCTTTCAGGAAAACCTCTGATGGTCAGTGGGTCCATGCCTTCTGTGCAGAGTGGGTATTTGAGACAACATTCAGAAGAGGACAAGTTCATCCTGTCGAAGGAATGGAAACATTGTTGAGAGGAACTGGTGCATGTTGTATCTGCCGCTGTAAGTGTGGTGTCTGCATTAAGTGCAACTACGGGCACTGCTTGACTATATTTCATCCATCTTGCGCAAGAAGTGCTGGTTTGTACATGAGTGTGAGGACAGTGAATGGAAAACTTCAGCATAAGGCTTACTGTGAGAGGCATAGTTTGGATCAAAGGGCAAAGGCTGAAACTCAAAAGCATGGGACCGAGGAGTTGAAGAACATCAAGCAAATTAGGGTTGAGCTGGAGAGGTTACGCCTACTCTGTGAAAGAATTGTTAAACGCGAGAAAATAAAGCGGGAACTGGTTCTTTGTTCACATGACATACTGGCTTTCAAACGAGATCATGTTACTCATAGTATGCTGGTTCATAATCCTTTCTTCCTTACCGGTGGAAGTTCTGAATCTGCTACCACTTCACTTAAAGGACATACTGATGACTACAGATCGTGCAGTGACACAATGCAAAGATCAGATGATATAACTGTGGATAGCTCAGTTTCTGCTAAGAAACGCACTAGAGTGAGCATGAATGGCAATCAAAGGACAGATGACGATTGTTCAACATCACAAAGTAGTTATAACCGAAATGTCATCATGGACAGAGTTCGATTTTCAGGAAAGCAGATACCTCAGAGGGCATTTTGTAACATGGATGATGGTGGATGGAGATCAGAGTCCAGAAAGCATTCTGAAATGTTCGAAAAGGAGCTGGTAATGACTTCAGATGAAGCGTCTATGAAAAATTCAATGTTGCCAAAGGGGTATGCATATGTTCCTGCTGATTGCCTGTCAAATGACAAGCAGCAGCTTCAGGACAAGCCATTAGAAAATGAAGGGTAG 4218 0.4305 MRWWWCTVLLSVMTGERFSRRKKMMGQGEEVGCGAEERPCPASRVPAKLPTESCRLGLKAKEDTGSPGIDFYSQARKALCERSPFDVAVESTSGSVSVTTLPSGLASSLNRHSERRRRPRKSHSGSDKKSSRGGDRSRGNSIWVETEEYFRNLSLPDIDHIFQLSSFSDLATRKCFSIPHLEHRPSTSNADEVVSASEITRNENVDHVKNEDTSMTIDNTGGDFSPSVYKECSSLGWLLGCRNKISLASERPSKKRKLLGCDAGLDKVLIARPCEGDSSLCHYCSTGDSGNKTSDLIVCSTCKVAVHRKCYGVKDGADEPWLCAWCKQNDGAGPVGDSVSTCVLCPKKGGALKPAYKNVEDGGSVKYAHLFCCLWMPEVYIEDLTRMEPIMNISGIKEARRKLVCNVCKVKCGACVRCSNGACRTSFHPICAREAKHRMEVWAKHGNGDVELRAFCSKHTETPDNVILRSGNSLPSGGPDKFGGMGVSMEASDKFDGSDSESQETLLSASKSNAMIMIEGDGRQHISDAVGLVGKSHEDVYPSDSVHFTIVLKKLIDLGKVDVKDVALDVGISPELLIANLSDDCVSPEVRFKIVTWLKNHAYMNTFQRNLRSRVKPVNSHKDEIGDYICDSLAVSGSDIMDPVAVKSVPPRRRTTNKIRLLKDNNLKSSGDAISRDVLHMEDCEADQPVISSPDNMSTRPENSRAPLANNSSDKPCNSSMSERVVEDEAATSMKNSVGGTDLCCLDATATKTAGSAFISTELVTSYIHPYVSEKLMQIQNWAPLESIRHSWKGDPSTVDGVFCDNHDHHSENHGAVTCNDQSNAEQLILARKMKLLESCPEDEVEGEIVYFQHSLISNLAARKQLSDNLICNVVKRLPLEIDATRQQQWDAVLVNQYLSDLKEAKKQGRKERRHKEAQAVLAAATAAAANSSRNSSFRKDALDESAPHENMFKIDASNGRSGVSSQLLPRARETLSRVAVTCNSTEKHSGLGITELDHSREHPRSCDICRRSETINPILICSSCKVAVHLDCYRSVRESIGPWYCELCESVAYRTSGVPAVNFWENPPFIVECGLCGGTTGAFRKTSDGQWVHAFCAEWVFETTFRRGQVHPVEGMETLLRGTGACCICRCKCGVCIKCNYGHCLTIFHPSCARSAGLYMSVRTVNGKLQHKAYCERHSLDQRAKAETQKHGTEELKNIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVTHSMLVHNPFFLTGGSSESATTSLKGHTDDYRSCSDTMQRSDDITVDSSVSAKKRTRVSMNGNQRTDDDCSTSQSSYNRNVIMDRVRFSGKQIPQRAFCNMDDGGWRSESRKHSEMFEKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKQQLQDKPLENEG* 1406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01184 1405 PANTHER PHD FINGER PROTEINS 71 945 - -
Pte16g01184 1405 SUPERFAMILY FYVE/PHD zinc finger 994 1051 IPR011011 -
Pte16g01184 1405 CDD ePHD 1074 1179 - -
Pte16g01184 1405 ProSiteProfiles Extended PHD (ePHD) domain profile. 339 460 IPR034732 -
Pte16g01184 1405 SMART PHD_3 280 327 IPR001965 -
Pte16g01184 1405 SMART PHD_3 404 460 IPR001965 -
Pte16g01184 1405 SMART PHD_3 1126 1180 IPR001965 -
Pte16g01184 1405 SMART PHD_3 1006 1050 IPR001965 -
Pte16g01184 1405 ProSiteProfiles Extended PHD (ePHD) domain profile. 1071 1180 IPR034732 -
Pte16g01184 1405 MobiDBLite consensus disorder prediction 688 723 - -
Pte16g01184 1405 ProSiteProfiles Zinc finger PHD-type profile. 1004 1052 IPR019787 -
Pte16g01184 1405 Coils Coil 899 919 - -
Pte16g01184 1405 ProSitePatterns Zinc finger PHD-type signature. 1007 1049 IPR019786 -
Pte16g01184 1405 MobiDBLite consensus disorder prediction 1285 1317 - -
Pte16g01184 1405 ProSitePatterns Zinc finger PHD-type signature. 281 326 IPR019786 -
Pte16g01184 1405 MobiDBLite consensus disorder prediction 691 720 - -
Pte16g01184 1405 MobiDBLite consensus disorder prediction 97 139 - -
Pte16g01184 1405 Pfam PHD-finger 293 326 - -
Pte16g01184 1405 Pfam PHD-finger 1017 1050 - -
Pte16g01184 1405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 994 1053 IPR013083 -
Pte16g01184 1405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 331 IPR013083 -
Pte16g01184 1405 Pfam PHD-zinc-finger like domain 341 459 - -
Pte16g01184 1405 Pfam PHD-zinc-finger like domain 1073 1179 - -
Pte16g01184 1405 SUPERFAMILY FYVE/PHD zinc finger 272 332 IPR011011 -
Pte16g01184 1405 Coils Coil 1200 1220 - -
Pte16g01184 1405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 336 462 IPR013083 -
Pte16g01184 1405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1071 1182 IPR013083 -
Pte16g01184 1405 ProSiteProfiles Zinc finger PHD-type profile. 278 329 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01184 Pte-Chr16 31608400 31617516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01184 277 461 C2H2 Transcription Factor Family AT3G14740 31.915 2.91e-19 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte16g01184 zf-HC5HC2H_2 1.5e-23 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01184 - - qsa:O6P43_019709 1529.61