Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01173 ATGGCTATGCCTGTGGCCATGGACGGCAAACATGGTTTTCAGCTTGCCCTTGCTTGTAACAACTACAGCTTCAAGACAGCCATGACTACCACGACAACCTCAACAACCACCAATTCGACCACCACCACCACATCTGATGATGACCATGGGTGTAACTGGAATGGGAATTGTTCCCCAGTTGTCGATTGGGACGCCTTTTTCAGTGGTCCACATGAATTCCAATACCTCATTGACTATATGATGGGTGATGAAGATATGCATAGCGGTTGTCAAGTCATTGAGGAAGAAGGATCCAATTCAGCAGTATCTCCTTCAACAACTGACATGGTGATTGTTGACGAAGAAACTAGATTCGAAGATGTTAAAGGTGTTAGGCTTGTACATCTCTTGATGGCAGCTGCAGAAGCTCTGGTTGGCTCAAGCCAGTGCACTGATCTTGCACGAGTGATATTGGTTCGGCTCAAAGAATTAGTTTCCCCAACAGAGGGCACCAACATGGAGAGGTTAGCAGCTCATTTTGCTGAAGCCTTACAAGCTTTGCTCGAAGGCTCTGCAGGTGGCAGTTCACATAGGAACAAGCACACGATCAAAAATAGTCTCCACTGTGATCAACATCATCAAGAAGACATGCTAGCTGCATTTCAATTACTCCAAGACATGTCGCCCTGTGTTAAATTCGGACACTTCACTGCTAATCAAGCAATCTTGGAGGCTGTATCCAATGATAAGAGGGTTCACATAGTGGATTATGATATCATGGAAGGTATTCAATGGGCTTCTTTGATGCAAGCTTTCGTGTCTAGGAAAGATGGAGCACCAGCCCCACACCTTAGGATCACGGCATTGTCAAGAGGTGGCAGTGGCCGGAGATCAATTGGAACAGTACAGGAGACCGGACGTCGGCTGGCTGCATTCGCAGCTTCAATCGGTCAACCTTTCTCGTTTCATCAATGTAGGTTGGACTCAGATGAAACATTCAAACCATCGAGCTTGAAGTTAGTACAAGGTGAGGCATTGGTTTTTAATTGTATGCTACACTTACCACACTTCAATTACCGGGCACCCGATTCAGTTGCTTCTTTTTTAAGTGGAGCTAATAGTTTGAATCCGAGGTTATTAGCATTAGTAGAAGAAGAACTTGGTCATAATCAAGATACCAGGTTTTTGGGTCGGTTTATGGACTCATTGCATCACTACTCTGCGATGTATGACTCATTGGAGGCTGGATTTCCTTTGCAAAGAAGAGCTCGCGCATTAGTGGAACGGGTTCTCTTCGGACCCCAAATATCCGGGTCATTGACCCGGATTTACCAGCAGAATGGAGAAAGAGAGAGAGTTCCTTGGGGAGAGTTTTTGAGTGAAATTGGGTTTAAGCCAATGTCAATGAGTTCTGCTAATCATTGCCAGGCAAAGCTTTTGTTAGGGTTGTATAATGATGGTTACAGTGTGGAGGAGTTAGCGAAGAATAAGTTGGTCTTGGGATGGAAGTCTAGGCCATTGCTCTCAGCTTCTATTTGGTGCTCTCATCCCTCTCAATCATCTGAACTGTAA 1551 0.4513 MAMPVAMDGKHGFQLALACNNYSFKTAMTTTTTSTTTNSTTTTTSDDDHGCNWNGNCSPVVDWDAFFSGPHEFQYLIDYMMGDEDMHSGCQVIEEEGSNSAVSPSTTDMVIVDEETRFEDVKGVRLVHLLMAAAEALVGSSQCTDLARVILVRLKELVSPTEGTNMERLAAHFAEALQALLEGSAGGSSHRNKHTIKNSLHCDQHHQEDMLAAFQLLQDMSPCVKFGHFTANQAILEAVSNDKRVHIVDYDIMEGIQWASLMQAFVSRKDGAPAPHLRITALSRGGSGRRSIGTVQETGRRLAAFAASIGQPFSFHQCRLDSDETFKPSSLKLVQGEALVFNCMLHLPHFNYRAPDSVASFLSGANSLNPRLLALVEEELGHNQDTRFLGRFMDSLHHYSAMYDSLEAGFPLQRRARALVERVLFGPQISGSLTRIYQQNGERERVPWGEFLSEIGFKPMSMSSANHCQAKLLLGLYNDGYSVEELAKNKLVLGWKSRPLLSASIWCSHPSQSSEL* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01173 516 ProSiteProfiles GRAS family profile. 117 507 IPR005202 -
Pte16g01173 516 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 98 503 IPR005202 -
Pte16g01173 516 Pfam GRAS domain family 126 506 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01173 Pte-Chr16 31482086 31483636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01173 114 510 GRAS Transcription Factor Family AT5G41920 35.149 5.84e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte16g01173 GRAS 1.2e-102 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01173 - - tcc:18592298 650.973