Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01170 ATGTCTTTGAGCCCTCCTCGTGCAAGAACGAATAGCCAAGCAACGAACTTCCAGCTCTATTGGTGCTACCAATGTCTCCGAATAGTTAGGGTCGCTGCCACCAATCCTTCTGAGATTGTTTGTCCTCGCTGTTTTGGACCTTTCATCTCAGAGTTTAACGTCAGAACTGCACCAAGATTCTTGCTTGATTTGACTGACCATGATCCTTCACCGGAATCCCGTTTGTTCGATGCTCTTTCTCTCGTGCTTGAACCACCAATCAGGCGCTTTAATCACCACGGTTTACAAGACCATGAAGACGATCAATCTGCAATTCGTTTTCGTTGGCTGCAACCTAGACAAAATCATGCTTATGAACATGATCATCAAGCTGGAGCTGAACCTCGTTTACGTCCAGTAAGAAGGAGGAGGAGAAGCGAGGGTTCTGATGGCAGAGTACGCAATGCAGCAGAGCAAGAACATGAACATACTCAAGCTCGACCTCGTACATGGATTATTCTTAGACCTATGGATCCTAACAACCCAGTCAGACCAGTTTTACAACCTCAACCTCTTGTCCCACCTGGGATGGATGCGAGAAACTACTTTGTCGGTCCAGGGCTAGACGAATTGATAGAACAGATTACAGAAAATGATAGGCAAGGTCCCCCACCTGCACCAAATGGAGCAATCAATGCTATCCCGACTGTGAAAATCACAGAGGTGCATTTGAAAGAGGATAGTTATTGCCCAGTTTGCAAGGAAGAGTTTGAAGTAGGTGGCGAGGCAAAGGAGTTGCCATGCAATCATATATACCATTCTGAATGCATTGTTCCATGGCTAAGGCTTCACAATTCTTGCCCTGTGTGCAGAAAAGAGTTGCCTCCAGTATCTTCTGGAAGTGACGAGCCTTCGAGTTCTCATGGTGAAGAAGAAGGTGGACCGTTAAGAAGGTGCCTGAGGTGGACGGCTTCCTGGTGGCGTTTTCATAGTAGGTACCGTCGAATCAGTCCACAAGGGGAGAGGGCTCCTGCTGCTGCTTCACGAAGTGGTGATAATTAA 1041 0.4707 MSLSPPRARTNSQATNFQLYWCYQCLRIVRVAATNPSEIVCPRCFGPFISEFNVRTAPRFLLDLTDHDPSPESRLFDALSLVLEPPIRRFNHHGLQDHEDDQSAIRFRWLQPRQNHAYEHDHQAGAEPRLRPVRRRRRSEGSDGRVRNAAEQEHEHTQARPRTWIILRPMDPNNPVRPVLQPQPLVPPGMDARNYFVGPGLDELIEQITENDRQGPPPAPNGAINAIPTVKITEVHLKEDSYCPVCKEEFEVGGEAKELPCNHIYHSECIVPWLRLHNSCPVCRKELPPVSSGSDEPSSSHGEEEGGPLRRCLRWTASWWRFHSRYRRISPQGERAPAAASRSGDN* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01170 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 290 IPR013083 -
Pte16g01170 346 Pfam zinc-ribbon 18 51 IPR039525 GO:0061630
Pte16g01170 346 ProSiteProfiles Zinc finger RING-type profile. 243 284 IPR001841 -
Pte16g01170 346 CDD RING-H2_RNF126-like 243 284 - -
Pte16g01170 346 MobiDBLite consensus disorder prediction 288 307 - -
Pte16g01170 346 SMART ring_2 243 283 IPR001841 -
Pte16g01170 346 SUPERFAMILY RING/U-box 223 290 - -
Pte16g01170 346 FunFam E3 ubiquitin-protein ligase RING1-like 206 290 - -
Pte16g01170 346 MobiDBLite consensus disorder prediction 116 161 - -
Pte16g01170 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 98 288 - -
Pte16g01170 346 Pfam Ring finger domain 242 284 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01170 Pte-Chr16 31460107 31462760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01170 202 302 C3H Transcription Factor Family AT1G68180 48.515 1.26e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01170 K11982 - qsa:O6P43_015206 359.377