LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte16g01158	ATGGATGCTTCGAGTAAACCAAGCCAAAATCCAAGGAGTCGAGAACAAGAAAATCAAGATGAGCTTTGTAAATTAGCCATCCGATTGTCCTTCAATGTTACACTTCAGATGGTTCTCAGATCAGCAATAGAACTCAACATCTTGGAGATTATCGCAGAAAACGATGAATCAGCTGGCGGCTTTCTCTCTGCTGAGAACATTGCAGGTAAGCTTCCCACGAAGAATCCGGAGGCCCCCATATTGCTAGACCGGATGCTTAGTCTTCTTGCCAGCCATTCTGTACTTGTGTGCTCTATTCAGACACAGGAAGATGGTGAAGCTCAGCGATTGTATGGACTGGGACCAATATCCAAATTCTATTTGAAAAATGAAGATGAAGGAACTATTGGTGCATTGCTTCTTTTGAACCATCATAAGATCTTTATGGAGAGTTGGAATCACTTGAATGATGCTATACTAGAAGGAGGAGTCCCTTTTGAAAGGGCACACGGGATGAATGTATTTGAATATCCGTTAAAGGATCCAAGCTTCAATGAAGGATTAAACCAGGCCATGTCAAATTTCACTACATTAGTAATGAAGAAGATACTTGATGTATACAAAGGGCTTGATGATGTTAACGTGTTGGTAGATGTGGGTGGTGGAACTGGGGTCAATCTCAACCTCATTACTTCTAAGTATCCTCACATCAAAGGAATCAATTACGATTTGCCTCATGTAATTGCAGATGCACCATCTTATTCAGGTATCTCATTCGTAGGGGGAGATATGTTTGTAAATGTTCCAAGAGCAGATGCCATTTTCATGAAGTGGATTCTCCATGACTGGAGTGACGATCATTGTTTGAAACTGCTCAAGAACTGCTATGAATCTCTTCCAAACTCAGGAAAAGTCATAATTGTGGAATCCATTCTTTCTGAAACTCCAGACAGCAGTGTTGCAGCCAACATTGTGCATTTGGTAGATCTTTCTATGCTAGCTCAAACTCATGGGGGCAAGGAAAGAACTCTAAAGAAGTTCAATACTTTGGCTACGAAATCTGGATTCTCGAGCTGTGAAGTCATATCTAGTATTTCCAATTCTTCTTTACTCCTAAGTAGCAAATCAAAGAGTTCATTGCATTCACAAGCCCTAGTTACTCTTCACCTTGCGAGAATGACGAACGATTCCGATCAACCACTCCTAAACCCTATTCCTCTAGAGTTTGAAAGTGAAAATGAGCTTGGCAAATTATCCATCCGTTTGGCCTTCGATATTTCTGCTCTCATGGTTCTGAAATCAGCTGTTGAACTCAACATCTTGGAGATTATAGCAGAAGCTGGAGAAGATGCTTTTGTCTCACCCAAACACATTGCCGCTAAGCTTCCAACTAAGAATCCGGACGCCCCAGTATTCCTGGACCGGATGCTTAGTCTCCTTGCCTGCCATTCTATAGTTAAATGCTCTACCCGTACAGTGGAAGATGGTGATCAACTCCAGCGACTGTATGGATTAGGACTTGTTTCTAAGTTCTTTTTGAAAAACGAAGGAGAAGGATCGATTGGTCCTTTGTATCACTTGAATGATGCTATATTAGAAGGAGGAGTCCCTTTCGACAGAGCGTATGGGAAGAGTGCATTTGAATATCTAGGAACAGATCCGAGGTTCAATCATGTATTTAACCGCGCCATGTCCAATTTCACTACATTGCTAATGAAGAAGATACTTGATGTCTACAGTGGGTTTGAAGATGTTAAGGTTTTGGTAGATGTGGGCGGTGGCATTGGAGCCAATTTAAACCTCATTATTTCCAAGTATCCCAAAACCAAAGGCATCAATTACGATTTGCCTCATGTGATCGCTGCTGCAGCATCCTATTCAGGAGTTGAGCATGTAGGAGGAGATATGTTTGCAAGTGTTCCACAAGGAGATGCCATCTTCATGAAGTCGATTCTCCATGACTGGAGTGACGACGACTGTTCAAAAATACTCAAGAACTGCTACAGAGCTCTACCAAACTCTGGAAAGGTCATTATTGTGGATCTAATTCGTCCGGAGACTCCAGCAAGTGACATTATCTCGAAGATGGTGTACTCGATAGATCTTTTTATGTCAGCTCAACATCATGGAGGCATGGAAAGGACTCAAAAGGATTTCAAGGAACTGGCTTTGAAATCTGGATTTTCGAACTGTGAAGTCAAATGCTGCGCTTACAATTTTGGGATAATAGAATTCCTCAAAATAGAGAATCAATGA	2235	0.4157	MDASSKPSQNPRSREQENQDELCKLAIRLSFNVTLQMVLRSAIELNILEIIAENDESAGGFLSAENIAGKLPTKNPEAPILLDRMLSLLASHSVLVCSIQTQEDGEAQRLYGLGPISKFYLKNEDEGTIGALLLLNHHKIFMESWNHLNDAILEGGVPFERAHGMNVFEYPLKDPSFNEGLNQAMSNFTTLVMKKILDVYKGLDDVNVLVDVGGGTGVNLNLITSKYPHIKGINYDLPHVIADAPSYSGISFVGGDMFVNVPRADAIFMKWILHDWSDDHCLKLLKNCYESLPNSGKVIIVESILSETPDSSVAANIVHLVDLSMLAQTHGGKERTLKKFNTLATKSGFSSCEVISSISNSSLLLSSKSKSSLHSQALVTLHLARMTNDSDQPLLNPIPLEFESENELGKLSIRLAFDISALMVLKSAVELNILEIIAEAGEDAFVSPKHIAAKLPTKNPDAPVFLDRMLSLLACHSIVKCSTRTVEDGDQLQRLYGLGLVSKFFLKNEGEGSIGPLYHLNDAILEGGVPFDRAYGKSAFEYLGTDPRFNHVFNRAMSNFTTLLMKKILDVYSGFEDVKVLVDVGGGIGANLNLIISKYPKTKGINYDLPHVIAAAASYSGVEHVGGDMFASVPQGDAIFMKSILHDWSDDDCSKILKNCYRALPNSGKVIIVDLIRPETPASDIISKMVYSIDLFMSAQHHGGMERTQKDFKELALKSGFSNCEVKCCAYNFGIIEFLKIENQ*	745

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte16g01158	744	FunFam	Caffeic acid 3-O-methyltransferase	395	505	-	-
	Pte16g01158	744	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	127	356	IPR029063	-
	Pte16g01158	744	Pfam	Dimerisation domain	423	474	IPR012967	GO:0046983
	Pte16g01158	744	Pfam	Dimerisation domain	37	90	IPR012967	GO:0046983
	Pte16g01158	744	FunFam	Caffeic acid O-methyltransferase	121	368	-	-
	Pte16g01158	744	Gene3D	-	3	120	IPR036388	-
	Pte16g01158	744	Gene3D	-	400	502	IPR036388	-
	Pte16g01158	744	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	413	740	IPR016461	GO:0008168
	Pte16g01158	744	SUPERFAMILY	"Winged helix" DNA-binding domain	18	124	IPR036390	-
	Pte16g01158	744	FunFam	Caffeic acid 3-O-methyltransferase	4	120	-	-
	Pte16g01158	744	PANTHER	O-METHYLTRANSFERASE	30	349	IPR016461	GO:0008168
	Pte16g01158	744	SUPERFAMILY	"Winged helix" DNA-binding domain	413	509	IPR036390	-
	Pte16g01158	744	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	27	368	IPR016461	GO:0008168
	Pte16g01158	744	CDD	AdoMet_MTases	579	676	-	-
	Pte16g01158	744	Pfam	O-methyltransferase domain	145	350	IPR001077	GO:0008171
	Pte16g01158	744	Pfam	O-methyltransferase domain	518	722	IPR001077	GO:0008171
	Pte16g01158	744	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	514	738	IPR029063	-
	Pte16g01158	744	Gene3D	Vaccinia Virus protein VP39	121	366	IPR029063	-
	Pte16g01158	744	Gene3D	Vaccinia Virus protein VP39	503	740	IPR029063	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte16g01158	Pte-Chr16	31285857	31308573	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte16g01158	404	740	Monolignol Biosynthesis Gene Families	AT5G54160	54.857	4.23e-127	381

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte16g01158	K13066		-	atri:130825454	614.379