Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01149 ATGGCTGATGTACTCTCTCTCATGGAAATCGATGGAGAAGACCATAACAACCCTGTTATTCCCAGTTCAGATAAGGGGAAGAACGTCGTCCTCTCGGGCAATCCTGTCGACGGCAAATCCGTTCCATGGGTTGAGAAATATCGTCCTCAGTCACTTGAAGATGTCGCGGCTCATCGTGACATTATTGATACCATTGATAGGCTGACAAGTGAGAAAAGGTTGCCTCATCTTCTGTTGTACGGGCCTCCTGGAACAGGCAAAACTTCAACTATTCTTGCAGTGGCACGAAAACTTTATGGATCCCAGTACAAGAATATGATTCTGGAGCTTAATGCATCAGATGACAGAGGAATTGATGTTGTGCGTGAGCAGATCCAGAACTTTGCTAGCACTCAGAACCTCTCATTTGGTGTTAAATCATATGTAAAGTTGGTTTTGTTAGATGAGGCAGATGCCATGACAAAGGATGCACAATTTGCCTTACGTAGAGTGATAGAGAAGTACACAAGAAGTACAAGGTTTGCACTTATCTGTAATCACGTGAACAAGATTATACCAGCACTTCAGTCAAGATGCACTCGATTTCGGTTTGCCCCTCTAGATGCGGTCCATGTCACTGAACGACTGAAGCAGATAATAAAAACTGAGGGGCTTGATGTCACTGATGGTGGCTTAGCAGCACTTGTAAGACTGAGTAACGGTGACATGAGGAAGGCTTTGAATATTTTACAGTCTACACATATGGCCTCACAGCAGATAACAGAAGAAGCAGTTTACTTGTGCACTGGAAATCCATTGCCAATAGACATTCAGCATATATCTCACTGGCTTCTTAATGAACCATTTGCAGAAAGTTTCAAAAGGATAACAGAAATGAAGACAAGGAAAGGACTGGCGTTGATTGATATTGTCAGAGAAGTGACCATGTTCTTTATGAAAATCAAGATGCCCTCATCTGTTCGAGTTCAGCTGATTAACGATTTGGCTGACATAGAATACAGATTGAGTTTTGGGTGCAACGACAAGCTGCAACTTGGTTCACTCATTGCGTCTTGTACGCGAGTAAGGACTGCATTGGTAGCTGCTGCAAATTAG 1095 0.4301 MADVLSLMEIDGEDHNNPVIPSSDKGKNVVLSGNPVDGKSVPWVEKYRPQSLEDVAAHRDIIDTIDRLTSEKRLPHLLLYGPPGTGKTSTILAVARKLYGSQYKNMILELNASDDRGIDVVREQIQNFASTQNLSFGVKSYVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKQIIKTEGLDVTDGGLAALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPIDIQHISHWLLNEPFAESFKRITEMKTRKGLALIDIVREVTMFFMKIKMPSSVRVQLINDLADIEYRLSFGCNDKLQLGSLIASCTRVRTALVAAAN* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01149 364 CDD AAA 61 199 - -
Pte16g01149 364 CDD HLD_clamp_RFC 200 262 - -
Pte16g01149 364 Gene3D - 24 199 IPR027417 -
Pte16g01149 364 Gene3D - 265 362 - -
Pte16g01149 364 Gene3D - 203 264 - -
Pte16g01149 364 FunFam Replication factor C subunit 5 202 264 - -
Pte16g01149 364 Pfam ATPase family associated with various cellular activities (AAA) 77 197 IPR003959 GO:0005524|GO:0016887
Pte16g01149 364 SUPERFAMILY post-AAA+ oligomerization domain-like 265 353 IPR008921 GO:0003677|GO:0006260
Pte16g01149 364 Pfam Replication factor C C-terminal domain 265 351 IPR013748 -
Pte16g01149 364 FunFam Replication factor C subunit 5 265 362 - -
Pte16g01149 364 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 258 IPR027417 -
Pte16g01149 364 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 41 347 - -
Pte16g01149 364 SMART AAA_5 73 203 IPR003593 GO:0016887
Pte16g01149 364 FunFam Replication factor C subunit 5 35 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01149 Pte-Chr16 31144892 31149392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01149 1 365 Core DNA Replication Machinery Family AT1G77470 74.799 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01149 K10756 - qsa:O6P43_015158 598.971