Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01148 ATGTCAGCCGATTTGAAGTTACCTCCAGGCTTCAGATTTCATCCGACCGATGAAGAGCTAGTGTTACACTACCTCTGCCGTAAATGTGCTTCCCAATCTATCGCCGTCCCAATCGTTGCTGAGATCGACCTGTACAAGTATGACCCCTGGGACTTGCCAGTTCTGTCCTTGTACGGAGAGAAAGAATGGTACTTCTTCTCTCCTAGGGAACGGAAATACCCTAACGGGTCGAGGCCGAACCGTGCTGCTGGGTCCGGGTACTGGAAGGCTACCGGGGCTGACAAACCCATTGGGAAGCCGAAACCAGTAGGGATCAAGAAAGCCCTGGTTTTCTATTCCGGGAAAGCACCCAAGGGAGAGAAAACCAATTGGATCATGCACGAGTATCGGTTGGCTGATGTGGACCGCTCTGCTCGCAAGAAGAACAGCTCAAAGTTGGATGATTGGGTACTTTGCCGTATTTACAACAAGAAGGGCAATATCGAGAAACGACCTCAGGGTCTTAGCCGGAGAATGGAGCCCACAGAAATGGAAGACCAGAAGCCAGCTATTCTGAAGGGCCGAGCAGCACTCTCAGATACCCCCGTTTCCGCTCCTCCGCCATCCGTAACTGCCAATGATTTCATGTGCTTCGACCCGTCCGATTCGATTCCGAAGCTGCACACGGACTCGAGCTGCTCGGAGCAGGTGGTGTCCCCTGAATTCGCAAGCGAGGTCCAGAGCGAGCTCAAGTGGGCTGGGTGGGACAACAAGAACGACCAATTTTTTCTTAATAATTACATGGATACCACTCTAGGAAATGACCTTTCTTCGCAGTTCCAGTGTGGGAATCAGATTTCGCCATTGCAGGATATCTTCATGCACCTGCAGAAACCGTTTGGGATTTAG 888 0.5135 MSADLKLPPGFRFHPTDEELVLHYLCRKCASQSIAVPIVAEIDLYKYDPWDLPVLSLYGEKEWYFFSPRERKYPNGSRPNRAAGSGYWKATGADKPIGKPKPVGIKKALVFYSGKAPKGEKTNWIMHEYRLADVDRSARKKNSSKLDDWVLCRIYNKKGNIEKRPQGLSRRMEPTEMEDQKPAILKGRAALSDTPVSAPPPSVTANDFMCFDPSDSIPKLHTDSSCSEQVVSPEFASEVQSELKWAGWDNKNDQFFLNNYMDTTLGNDLSSQFQCGNQISPLQDIFMHLQKPFGI* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01148 295 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Pte16g01148 295 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Pte16g01148 295 PANTHER NAC TRANSCRIPTION FACTOR 56 7 214 - -
Pte16g01148 295 FunFam NAC transcription factor 16 161 - -
Pte16g01148 295 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Pte16g01148 295 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01148 Pte-Chr16 31141737 31143197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01148 1 293 NAC Transcription Factor Family AT1G01720 67.434 6.95e-142 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte16g01148 NAM 8.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01148 - - gmx:732553 431.795