Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01132 ATGGATTATTCAAGCAAAAATCACCTGATCCGTGGCTTACAAGCTGTTTCACCAGTTACAAGTCAAGGAGGCACTGTCTCTGGTTCGCATGTCCATAGTTCTTCTGATGCTAGTTTTCCCATTATAGCCATTGCTGTCATTGGGATTTTGGCCACAGCTTTCCTGCTTGTGAGTTACTACATCTTCGTCATCAAATGCTGTCTCAATTGGCACAGAATCGATCTTCTAAGACGTTTCTCACTATCAAGAAGACGCGAAGAGCCATTGGTTGTTTACTCTCCAGGAACAGAGCTGAGAGGGCTAGAAGAGGCAGTGATTCGCTTAATCCCAGTGATTCAGTTCAAGAAAGAAGAAACCAGAGAATCTGAGGAAAGAAGCTTTTGTGAATGTGCAGTTTGCTTGAATGAGTTCCAGCAAGATGAAAAGCTCAGGATGATACCAAATTGCAGCCATGTCTTCCATATTGATTGCATTGATGTCTGGCTTCAGAGCAATGCTAACTGCCCACTCTGCAGAAGAAGCATTTCCCTCTCCACCCGGTTCCAAAGAAATCACATTCTGAGTACTCCAAGCCCTTCTCCTCAAGAACTTAGTCCATACAATGATAATCTTGTTGGCGGGGATGAAGATTTCGTTGTGATTGAATTGGGTGGTGGCAGTGGTTCAGATCATCAAACATTGCTTGAAAAACAAGAAAGGTCCATGCATCCTGTTAGTCGTTCACCAAGGAAATTGGAACAGAAACTTGGGCGGCAGAAGAAGGCAAGGAATTTGCATAAACTCACAAGTATGGATGATGAGTTCATTGATAGTAGAGGCAAAGATGAATACTTTTTAGTTCAACCGATCAGAAGGTCATTTTCAATGGATTCTTCTAGGGATAGACAGCTTTGTTTGGCAGTTCAAGCGGCTCTGCAACAGCGAAACGGGCAGCAAGTCATTGAGGTTAGTCCCAGCGAAGGTTGTAGCAGCAGAGTGAGAAGATCATTCTTTCCTTTTGGAAATAGTAATAGGTCAAGAAGTGCAGTGCTGCCAGTTTCTCTGGACCCCTAG 1053 0.4368 MDYSSKNHLIRGLQAVSPVTSQGGTVSGSHVHSSSDASFPIIAIAVIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRFSLSRRREEPLVVYSPGTELRGLEEAVIRLIPVIQFKKEETRESEERSFCECAVCLNEFQQDEKLRMIPNCSHVFHIDCIDVWLQSNANCPLCRRSISLSTRFQRNHILSTPSPSPQELSPYNDNLVGGDEDFVVIELGGGSGSDHQTLLEKQERSMHPVSRSPRKLEQKLGRQKKARNLHKLTSMDDEFIDSRGKDEYFLVQPIRRSFSMDSSRDRQLCLAVQAALQQRNGQQVIEVSPSEGCSSRVRRSFFPFGNSNRSRSAVLPVSLDP* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01132 350 SMART ring_2 130 171 IPR001841 -
Pte16g01132 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 177 IPR013083 -
Pte16g01132 350 Pfam Ring finger domain 129 172 IPR001841 -
Pte16g01132 350 FunFam E3 ubiquitin-protein ligase ATL6 92 178 - -
Pte16g01132 350 PANTHER RING-H2 FINGER PROTEIN ATL16 24 346 IPR044600 GO:0016567|GO:0016740
Pte16g01132 350 CDD RING-H2_EL5-like 129 172 - -
Pte16g01132 350 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Pte16g01132 350 MobiDBLite consensus disorder prediction 230 252 - -
Pte16g01132 350 SUPERFAMILY RING/U-box 129 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01132 Pte-Chr16 30931263 30932315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01132 33 351 C3H Transcription Factor Family AT1G04360 52.394 2.70e-104 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01132 - - cave:132179160 418.313