Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01130 ATGGATGAGCACCGGCGAGGGAGACAGGATGAGTACGAGAAGGGCAAGGAAGAGGTCCGGTACCGCGGAGTTCGAAAGCGGCCATGGGGAAAGTATGCAGCAGAGATAAGAGACCCATCAAAGCAAGGGGCACGTCTATGGCTTGGAACGTTTGAAACAGCAGAGGAAGCAGCTGTTGCTTATGACAGAGCTGCTTTGAAGTTAAGAGGGCATCTCGCGATTCTAAACTTCCCTAATGACCATTACCCTCAGCAACCTCATCAAGTAAGAGGTAATTGTTCAGCTTATGCTCCTCATGTGTCTGTGGCGTCGTCATTGTCATCGCCGTCACCATCTTCTTTGTGTGGCAACTTTGAGAGGGGGAGTTCTTCAGCAGAACAACCAAAGGAGGTGTTTGAATTTGAGTACTTGGATGACAAGGTTTTGGAGGAGCTTCTTGAATCAAAGCCCACCAAGGAGGAAATGTAA 468 0.4893 MDEHRRGRQDEYEKGKEEVRYRGVRKRPWGKYAAEIRDPSKQGARLWLGTFETAEEAAVAYDRAALKLRGHLAILNFPNDHYPQQPHQVRGNCSAYAPHVSVASSLSSPSPSSLCGNFERGSSSAEQPKEVFEFEYLDDKVLEELLESKPTKEEM* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01130 155 MobiDBLite consensus disorder prediction 106 124 - -
Pte16g01130 155 ProSiteProfiles AP2/ERF domain profile. 20 78 IPR001471 GO:0003700|GO:0006355
Pte16g01130 155 SMART rav1_2 20 84 IPR001471 GO:0003700|GO:0006355
Pte16g01130 155 Pfam AP2 domain 20 71 IPR001471 GO:0003700|GO:0006355
Pte16g01130 155 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Pte16g01130 155 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Pte16g01130 155 FunFam Ethylene-responsive transcription factor 2 19 79 - -
Pte16g01130 155 CDD AP2 20 80 IPR001471 GO:0003700|GO:0006355
Pte16g01130 155 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Pte16g01130 155 PANTHER DNA-BINDING DOMAIN 13 149 IPR044808 GO:0003700|GO:0009873
Pte16g01130 155 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Pte16g01130 155 MobiDBLite consensus disorder prediction 106 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01130 Pte-Chr16 30869119 30869848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01130 17 152 AP2-EREBP Transcription Factor Family AT3G23230 61.029 1.30e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte16g01130 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01130 - - qsu:111996186 172.17