Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01122 ATGGATTCCTGTGAGCATCTCGATCCTACTACGGTTAGCGATTCAGTTGGCGGGCATGTTGTGCAGCATTCAAGCTCTGAAATTCCCGAGCAGCCTGCTTTGTTGCAGAGGTTTTATTCGGAAGTAGGTCGCTCTTGCAATAATGATATGCTTGGTGGTCGCGACAAGAGCGAAGACACACCTGCTTGTGTGAGCCCTGCTGATGCGTTGGAGAAGTCTTCCATCAGTAATGATTGTTTGGTGGACGAATGTGAGAATGTTGGTAGGTCGGCGCCAGAGAAGGATGTATATAACGAATGCACCACGAGTGTGAGTGGGCAAGGTTGTAAGGGTGATTTTCGTAATTCAGGAAGCGGTGGGTTGTGTTTAGAGAAAGGAATTTCTCAAGGTGTGGTCCATGGCCAATTGTGCTCAGAGACTGTATCTACTTCAGGCTTGTTAAAAAATTCTGCTGTGTTAAACCAACAGAGGGATGATAGGAGCTACAAGGCCCCTCCTATGGAAGGATTTGCACCGATTATGGAAAACCTAAAAGATGATGATGATGCCAGCGACCTACCCAATGCCTACAACGAATCGTCTCCTTTATATAATTGTCAGATGCCATTAAAGTCACAGGCACTGGCTGATCTTCCTGGAGTTTCTCCCCAGCAAAATAAGCAGGAAGATGTTGAGAGAGCCCCTGATTCCTCTGGGTGTGTGGAAGATGAGCCAATATCTTTTAAAGGAATGGCGGCTTGCAAACATATCTTCCCTTCTCAGGATATTGAAGTTCCTTCAAGTTCATTTCATTCTGATTTTGAGAGTTTTCCTGATCTGTTGCATAACCAGAGCCATGGTCAGGGTAGCAGTAGTTCATTTAGAGATGGGAGCAGAGATGATGTTAATGTGGCAAGTGATATTTCTGTGTGTATCCCAACAATACAATTACATAGTTGTCAGGAGACAGTGGAGAATTCACTTGTAGCCGATTCACCTGTTCCAGAAGGCCCAATGAAGCTGAGAGATGACACGAGAGTTGTTGTTGACGTGGAAAATGATATTCCTGTGTGTATCTCAAAATCACAGTTGCTGAGTTGCCGGGAGATCGTGGATAATTCACATATAGCTGATACACCTGTTCAACAAGGCGTGAAGGAGTTGAGAGAGGACGCAAGAGTTCTTGTTGCATGTGTTGGCTCGGAATTAAAAGTTTTGGATCAGAATATCCTGGATTCTGATGCATATGTTGGAAACACAGGCAATTTGAAGGATAATGACTCAGAAACGACCACTGACTCCACGAGCAAAAGTCCATTTTCTCCTGAATCACTCAAAGCTTCTTTTTTAATCAACAATAGTTATTCAAAAGACATCCTTCATATCGCTAAAACTGAAGTAGGTACTATAAATTCAGGTGTTTTCAGTGCTTGTACTTATCAGATGGATGGCAATGGGGAAAATGATGTTTCAGTTGATGTTAGTGCTGGAAGCAAGTTTTCTGATACCGTAGCCTCAATTTCTCTTAGGAACAGTCGAAGAAGTAAAGATAGGTGTAAGATTCAGACAAAGAGGGCGTCCAGAAAGTGCATGAACAAAGCTAATCTAGGCAACAGTATGGACATCATTTTTGAGGCTGCTAGAAGAAAGAGAAGTAGTATCTCCAAGCCTGCTCGTTCTTCAGTGTGGGGTTCGCTTGGGAACGTAGAAGAGTTCTTTGAGCAGAGTAGCGGACCTCAGGTCAATCAATTGGTGTGTCCAGGATTGAGTAAGAAACATGGTCGGCGAAAGGGCAGGAATAAAGAGAATAACTCAAGTGTAAGATTGCAGGGACAGCAAAAATCCTTCTCAAACTTGCGGGTGCGATTGAAGGTCAAATTGGGTAAAGAACATAATCAAAGTTGTGTGAACATCACTGTTCCAGAGGTTGCTGATTCCTCAGTTGTTGCAAACAGCTCTATAACTGGTGCATGTTCTCAAAGAGGAACTAGTGTTGACAACAAAGATGCATTGGAGGGTTTTGGATTCATTGAGAAGAAACTTATGAAGGATGTGCATTCTGCAAATGGGAAGCTTGAAAGTAACCACTCAGATAGCACGGCAGTTGTCCAAAAATCATCTGGATGTGCCGAAGATCAAATAATTTCTTCTGAAAATGGTGTTGATGGTTTGGGAGAGGCAATCGATAGCAAGGGCATGGATCCTGGTACTTCACCAGATTCAGAAGTCATTAATGCAATTCCAGAAGTCCAAGTTGGAGAAAGAGAAGATGAAAATATGCATAATGCAGTTCTTAATTTGAAGGACTTCAGTTCTCCTACCGACGCCATGAGTGTTAAAAGAGGAAAGAAGAAAGACAAGCCCCCAAATAATTGTGTTATTGAAGATGGATCAACTGCTTCCAAATGTGCGAATAAGGGTAGGTCAAAAAAGAAATATGCTCGAAAAAAGAATAATAATGCTGACATAAATGTTGGTTCATCAATCAGTAAGGATCTGTCCATGGATTCTTCGCGCCATGTTAGAAAGCTTGAACTTGGATCAACCCCAGAAGGTTTTGAATATGGAAATGGCAGATCAGCAGAGGCAACTTGCTGCTTAGATGTTGGCGGTGGCTCGTTAATATCTGAAAGTCTGGAGCATACGCTGCCTTCTGCTTCTTCTTCACAACAAAAACTTACGAAAGATCAGAAATCAAGGAAAGTTGACAAGGGCCGATCTAGAACTTCTAACTCAGAGACAAGCAGGAAACAGGCGGCAGGAAAAAGCAGAAGAAAGCAGGGGAAATCAGTCATTAAGAATAAACTACCAAAGAACGATGCACATCAACAAGTGATGTGCAAAGCTGACAATCATCTGAATTCGGGAAATTGCCTTGATGGAAATCCATTGAGAAATTTTACTACTGCAAAAATTGATGCTGACCAGAAAAATCATAGTTTAAGCAACAATGATATGAACACTGTGTCTGACATTGGTTTGGAGGAGCAGGAGCCAGTACCCTATAAGGCTTGGGTGCGATGTGATGAATGTCACAAGTGGCGGCGCATTTCAACTGAACTTGCAGACTTAATTGAAGAAACAAATCGCACTTGGACCTGTAAGGACAGCTGCGATGGAGCGTTTGCCGATTGCTCCATTCCTCAGGAAAAGCCAAATGCAGATATCAATGCAGAGTTGGGACTGTCAGATGCTTCTGGTGAAGATGATGCTTATAATACCTGTAAAAATTACAGACAATTGGAATACAAGCCTCCAGTAGTGTCCCAGGAGTCAACTTTTACTCATATACTTACGAATGAATTTCTTCATCGCAGACGCAAAACTCAGACTATTGATGAGGTAATGGTGTGCCATTGTTCACCAAATCCAAGTGGTAAGCTGGGTTGTGGAGATGAATGTTTGAACCGGATGCTAAATATTGAATGTGTTGAAGAAACCTGCCCATGTGGAGACCTCTGTTCAAATCAACAGTTCCAGAAACACAATTATGCCAAATTGGAGTGGTTTAGATGTGGGAAGAAGGGTTATGGGTTGCAGGCTGTTGAGCATATATCCAAAGGGCGGTTTCTTATTGAGTATGTTGGAGAGGTGCTTGACATGCCTGCTTATGATGCGCGACAAAGAGAATATGCTTTGAAGGGTCACAGACATTTCTACTTCATGACCTTGGATGGCAGTGAGGTAATAGATGCAAGTGCAAAAGGAAATTTGGGGCGATTTATCAACCATAGTTGTGATCCTAATTGCCGTACAGAGAAGTGGATGGTGAACGGTGAAATTTGCATAGGCCTCTTTGCTTTGAGAGATATTAAAAAGGGTGAAGAAGTGACTTTCGACTACAATTATGTGAGAGTCTTTGGTGCTGCTGCAAAAAAGTGTTATTGTGGAGCATCCCGGTGTCGTGGTTACATAGGTGGTGATCTTCTTGATGCAGAAGTAATTGTTCAGGGTGATTCAGATGAAGAATTTCCAGAACCCGTGATGCTTAAAGAAGATGGCGAAATTGAAGACAAAGCCCTCGATGTCAAATTATCTGATGATACTAAGATGCAAGCATTTGGGCCTGAATCTAAGGAGATGAATGAGGTAGATGAATCCGCAATTGATGGTGGACAATGTCAGAGACATAGAGAAGGGAATTCCACAGACGGTGTTTATGCAGTCTCTGAATTACAAAGTTTGCTAAAATTAGAGGATTCTGACAGGAAGTTACCAGCATCTTTGGAAGTGGAAGCACCAATACGAATGGAAGATAGGGAGAACGTAGATAAACTTCCTGTTCAAAGTTTCACAGAGGATGATAACATAAAAAATTCCTCTTCCAACATTGAAGGATTTGGTATTTCTTTCCCAAATACTTCTCTTGGTAAAGAATTAATTGGTATTGTAAATAGTGCATCTGACTCTGACTTAGTTAAGAGCGAGCTAGTTTCTTCAAAATCAGGTCCACTTATGAAGAGTCGAGCAATCAGCCATGTAAAGAAGGAAAAAATTCGAAGTGCTACAAAATCTGAGAAAGTCAAGGTGACTGTTAATAAACTTCAATTATCATCTATCAAACAGAAAAGAGCGATGGAGGGTCCGAATAGCCGCTTTGAAGCAGTTGAGGGGAAACTTAACGAGTTACTGGATGAAGAAGGGGGCATAAGCAAAAGAAAAGATGCCACCAAAGGATACTTGAAGCTTTTGCTTCTTACTGCAGTATCTGGCGATAGCATGAATGGTGAAGCGATTCAAAGCAATCGAGACCTTTCAATGATCCTTGATGCCCTTCTGAAAACAAAGTCACGTACTGTACTGAATGATATAATCAACAAAAACGGATTGAGGATGTTGCACAACATAATGAAGAAGTACAGGCGGGACTTCAACAAGACACCAATACTCCGGAAACTTCTCAAGATTTTAGAGTACATGGCCGCACGCAACATACTAACATCTGAGCACATCAATGGCCTGGCTCCTTGTGCTGAAATGGAGAGCTTTGGGGACTCAATTCTGTCACTGACGGAGCATGATGATAGACAGGTTCATCAAATTGCTAGAAGCTTTCGAGACAAATGGATAAGACCTTTCAGAAATAGGGAGATCAGTGGATCAGAATCCCAGAGGAGTTGCAATTCTAATAGATCCTTGCCTGCTAACAACTATAGGCGGGATCAGGATGTGAGATTCACAGAGACTTATGGTGCTCAGTCAATGCTTCCAACAACTTCAACGGATACAAGTGCCCAATCTAGTTGCTTGGCACCTGCAACTGATGGTTCTGAAAGTAACACAACAAGAAGACGCAAGCGTAAAAGCCGATGGGATCAGCCAACTGAAACAAATTCAAATCCATTACCTCATCAGAAAGTTGACTATTTGCAGCTAAATCAAGTTAACTGCTTTCAGCAAGATGCTCCTACCAAGTTTGACAATGAAAAGATGGACGTTTCTGATGATGTTCCTCCTGGTTTTTCTTCTCCTGTCCATCCCCATTTGAGTTCATTTCATGTTTCATCGAATGACAAAGATCACAGTGGTCACAATGATTGGCACTCTCCGAATCGTTCTACAGTTCTGGGGCATTTACAGGAGAAATTTCTTTCTCGCTTGCCTGTCTCTTATGGAATTCCTGTATCTACTGTACAACAATATGGCACGCCAGAATCTAAAGTTGCTGATGGTTGGGCCATTGCTCCATCAATGCCGTTTAGTCCTTTTCCTCCCTTACCTCCATATCCAAGGGAGAAGAGAAAACACTCCCCTTCACAAGCAACTCAACCTGTCATGATGAATTATCCAGCTGAAGTGAGAAATCGGGGAGCCTATAACACAGCCAGTTGTTACTCTGGGGAGTCCACTCCAAGTGCAATGGGCCCTAATAATCAAAATGTGGATCGGTGGTATGGGAACCTTGATTCACACAAACGAGTAAAAGGTTCGTCTAATGATTTGGGAAGAAGATACTATAGGCAGCAAAAGTGGAATAATGCAAAACAAGTTGCCCCTTGGATACGCAATGGAACTGCTTGGGGAGGCAATCGAAACAACAGTTCAAGGGGTGGAATGTGTAGTACAGGTGTAGGAGATGCTCCCAATGACCCTAGAACTTCGAATTGTTCTAAGTTGGGGAGAGCTGGTAATAATGGCTATCCCCATACACAGCAACAAAACGAATACTGA 6150 0.4236 MDSCEHLDPTTVSDSVGGHVVQHSSSEIPEQPALLQRFYSEVGRSCNNDMLGGRDKSEDTPACVSPADALEKSSISNDCLVDECENVGRSAPEKDVYNECTTSVSGQGCKGDFRNSGSGGLCLEKGISQGVVHGQLCSETVSTSGLLKNSAVLNQQRDDRSYKAPPMEGFAPIMENLKDDDDASDLPNAYNESSPLYNCQMPLKSQALADLPGVSPQQNKQEDVERAPDSSGCVEDEPISFKGMAACKHIFPSQDIEVPSSSFHSDFESFPDLLHNQSHGQGSSSSFRDGSRDDVNVASDISVCIPTIQLHSCQETVENSLVADSPVPEGPMKLRDDTRVVVDVENDIPVCISKSQLLSCREIVDNSHIADTPVQQGVKELREDARVLVACVGSELKVLDQNILDSDAYVGNTGNLKDNDSETTTDSTSKSPFSPESLKASFLINNSYSKDILHIAKTEVGTINSGVFSACTYQMDGNGENDVSVDVSAGSKFSDTVASISLRNSRRSKDRCKIQTKRASRKCMNKANLGNSMDIIFEAARRKRSSISKPARSSVWGSLGNVEEFFEQSSGPQVNQLVCPGLSKKHGRRKGRNKENNSSVRLQGQQKSFSNLRVRLKVKLGKEHNQSCVNITVPEVADSSVVANSSITGACSQRGTSVDNKDALEGFGFIEKKLMKDVHSANGKLESNHSDSTAVVQKSSGCAEDQIISSENGVDGLGEAIDSKGMDPGTSPDSEVINAIPEVQVGEREDENMHNAVLNLKDFSSPTDAMSVKRGKKKDKPPNNCVIEDGSTASKCANKGRSKKKYARKKNNNADINVGSSISKDLSMDSSRHVRKLELGSTPEGFEYGNGRSAEATCCLDVGGGSLISESLEHTLPSASSSQQKLTKDQKSRKVDKGRSRTSNSETSRKQAAGKSRRKQGKSVIKNKLPKNDAHQQVMCKADNHLNSGNCLDGNPLRNFTTAKIDADQKNHSLSNNDMNTVSDIGLEEQEPVPYKAWVRCDECHKWRRISTELADLIEETNRTWTCKDSCDGAFADCSIPQEKPNADINAELGLSDASGEDDAYNTCKNYRQLEYKPPVVSQESTFTHILTNEFLHRRRKTQTIDEVMVCHCSPNPSGKLGCGDECLNRMLNIECVEETCPCGDLCSNQQFQKHNYAKLEWFRCGKKGYGLQAVEHISKGRFLIEYVGEVLDMPAYDARQREYALKGHRHFYFMTLDGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKKGEEVTFDYNYVRVFGAAAKKCYCGASRCRGYIGGDLLDAEVIVQGDSDEEFPEPVMLKEDGEIEDKALDVKLSDDTKMQAFGPESKEMNEVDESAIDGGQCQRHREGNSTDGVYAVSELQSLLKLEDSDRKLPASLEVEAPIRMEDRENVDKLPVQSFTEDDNIKNSSSNIEGFGISFPNTSLGKELIGIVNSASDSDLVKSELVSSKSGPLMKSRAISHVKKEKIRSATKSEKVKVTVNKLQLSSIKQKRAMEGPNSRFEAVEGKLNELLDEEGGISKRKDATKGYLKLLLLTAVSGDSMNGEAIQSNRDLSMILDALLKTKSRTVLNDIINKNGLRMLHNIMKKYRRDFNKTPILRKLLKILEYMAARNILTSEHINGLAPCAEMESFGDSILSLTEHDDRQVHQIARSFRDKWIRPFRNREISGSESQRSCNSNRSLPANNYRRDQDVRFTETYGAQSMLPTTSTDTSAQSSCLAPATDGSESNTTRRRKRKSRWDQPTETNSNPLPHQKVDYLQLNQVNCFQQDAPTKFDNEKMDVSDDVPPGFSSPVHPHLSSFHVSSNDKDHSGHNDWHSPNRSTVLGHLQEKFLSRLPVSYGIPVSTVQQYGTPESKVADGWAIAPSMPFSPFPPLPPYPREKRKHSPSQATQPVMMNYPAEVRNRGAYNTASCYSGESTPSAMGPNNQNVDRWYGNLDSHKRVKGSSNDLGRRYYRQQKWNNAKQVAPWIRNGTAWGGNRNNSSRGGMCSTGVGDAPNDPRTSNCSKLGRAGNNGYPHTQQQNEY* 2050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01122 2049 PANTHER SET DOMAIN PROTEINS 531 1770 - -
Pte16g01122 2049 Gene3D SET domain 1056 1307 IPR046341 -
Pte16g01122 2049 MobiDBLite consensus disorder prediction 583 604 - -
Pte16g01122 2049 MobiDBLite consensus disorder prediction 1693 1778 - -
Pte16g01122 2049 ProSiteProfiles AWS domain profile. 1106 1156 IPR006560 GO:0005634|GO:0042054
Pte16g01122 2049 Pfam AWS domain 1121 1155 IPR006560 GO:0005634|GO:0042054
Pte16g01122 2049 ProSiteProfiles Zinc finger CW-type profile. 992 1046 IPR011124 GO:0008270
Pte16g01122 2049 MobiDBLite consensus disorder prediction 1995 2049 - -
Pte16g01122 2049 ProSiteProfiles Post-SET domain profile. 1283 1299 IPR003616 -
Pte16g01122 2049 Pfam CW-type Zinc Finger 998 1044 IPR011124 GO:0008270
Pte16g01122 2049 MobiDBLite consensus disorder prediction 1 28 - -
Pte16g01122 2049 Pfam SET domain 1169 1275 IPR001214 GO:0005515
Pte16g01122 2049 MobiDBLite consensus disorder prediction 876 933 - -
Pte16g01122 2049 MobiDBLite consensus disorder prediction 887 904 - -
Pte16g01122 2049 SUPERFAMILY SET domain 1086 1296 IPR046341 -
Pte16g01122 2049 SMART set_7 1158 1281 IPR001214 GO:0005515
Pte16g01122 2049 SMART shorttest3 1106 1157 IPR006560 GO:0005634|GO:0042054
Pte16g01122 2049 MobiDBLite consensus disorder prediction 1999 2013 - -
Pte16g01122 2049 MobiDBLite consensus disorder prediction 762 808 - -
Pte16g01122 2049 MobiDBLite consensus disorder prediction 2020 2049 - -
Pte16g01122 2049 Gene3D - 996 1055 - -
Pte16g01122 2049 ProSiteProfiles SET domain profile. 1158 1275 IPR001214 GO:0005515
Pte16g01122 2049 MobiDBLite consensus disorder prediction 1720 1751 - -
Pte16g01122 2049 MobiDBLite consensus disorder prediction 410 434 - -
Pte16g01122 2049 MobiDBLite consensus disorder prediction 213 235 - -
Pte16g01122 2049 MobiDBLite consensus disorder prediction 1693 1710 - -
Pte16g01122 2049 FunFam Histone-lysine N-methyltransferase 1057 1313 - -
Pte16g01122 2049 SMART PostSET_3 1283 1299 IPR003616 -
Pte16g01122 2049 CDD SET_SETD2 1157 1299 IPR044437 GO:0010452|GO:0046975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01122 Pte-Chr16 30759190 30771018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01122 1141 1298 C2H2 Transcription Factor Family AT2G23740 36.612 2.58e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pte16g01122 SET 7.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01122 - - qsa:O6P43_019792 1443.71