Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01107 ATGAAAGATTATTCTGGAACTGCAGGTTCAGGTGACGACACAAAGATTTCCACTTGTCCTCGAGGTCACTGGAGGCCTGCAGAGGATGAAAAGCTGAGACAGCTAGTTGAGCAATATGGTGCACAAAATTGGAACTCTATTGCTGAGCAACTACAAGGAAGATCAGGTAAAAGTTGTAGACTAAGATGGTTTAACCAACTAGACCCTAGAATCAACAGAAGACCATTTACTGAAGAGGAAGAAGAAAGGCTTCTTGCAGCACATCGTCTCTATGGCAACAAGTGGGCACTGATAGCTAGGCTTTTCCCAGGTCGAACTGATAATGCAGTGAAGAATCACTGGCATGTAATAATGGCAAGAAAGCAAAGGTACCGATCCAAGTCAGGAGGGAAAAGGAGCTTACATGATACCTACAACGATTACAGCACAGCTCAAGTTCCCTTCAATTATCTCCATGATCAAAGGAACATTAAATCAAAACCTCAAGACCCTTTGATTGAATGGAGAACAGGATCCGAACAGAATAACCGTAAACATCTTGAATTTCGACATCTGGTCAATATTAAAGATAGGAGATTCTGGGACTCATCAGTTGCTTCTTCTAGCTCAAATTTGCATTCATGGAACTTGGCAGCAACACCTACCACTTCAAATAACTCAACTCTTGCTCATTTATCCAGAAAAGAAGGAAAGGATTTCTTAAACAATGGTGCTACGAGGAACGCTGCAGATAGGTCATTTCTTCATAGGTGTTACAACAACTCCTCAAGTTATGACAGTTTCCGAGGTCTGAATGCCTTTAACTACAGCAGGAGGGTTGTTCCAAGCCCTTTCGGATATCGCAGTGTCGATGATTTTGTAGGTAGTTGGAAAAACATAGGAGATTTAGTTAGTTTTAAAAGTAACACATCTGGATTCAGAAATTCAAGGACACCCAAGGAGGAAGAGCAAGAAGATGAGTCCAATGAACACAACGAAGTCCCGTTCATCGATTTTCTTGGTGTGGGCATATCTTCATGA 1020 0.4167 MKDYSGTAGSGDDTKISTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEQLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRLYGNKWALIARLFPGRTDNAVKNHWHVIMARKQRYRSKSGGKRSLHDTYNDYSTAQVPFNYLHDQRNIKSKPQDPLIEWRTGSEQNNRKHLEFRHLVNIKDRRFWDSSVASSSSNLHSWNLAATPTTSNNSTLAHLSRKEGKDFLNNGATRNAADRSFLHRCYNNSSSYDSFRGLNAFNYSRRVVPSPFGYRSVDDFVGSWKNIGDLVSFKSNTSGFRNSRTPKEEEQEDESNEHNEVPFIDFLGVGISS* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01107 339 FunFam MYB transcription factor 21 72 - -
Pte16g01107 339 Gene3D - 21 72 - -
Pte16g01107 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 67 IPR017930 -
Pte16g01107 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Pte16g01107 339 MobiDBLite consensus disorder prediction 304 325 - -
Pte16g01107 339 CDD SANT 84 115 IPR001005 -
Pte16g01107 339 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Pte16g01107 339 SUPERFAMILY Homeodomain-like 20 114 IPR009057 -
Pte16g01107 339 CDD SANT 24 65 IPR001005 -
Pte16g01107 339 FunFam MYB transcription factor 74 145 - -
Pte16g01107 339 PANTHER MYB PROTEIN-RELATED 21 211 - -
Pte16g01107 339 Gene3D - 74 141 - -
Pte16g01107 339 ProSiteProfiles Myb-like domain profile. 21 67 IPR001005 -
Pte16g01107 339 Pfam Myb-like DNA-binding domain 24 84 - -
Pte16g01107 339 MobiDBLite consensus disorder prediction 309 325 - -
Pte16g01107 339 SMART sant 20 69 IPR001005 -
Pte16g01107 339 SMART sant 72 120 IPR001005 -
Pte16g01107 339 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01107 Pte-Chr16 30592186 30593616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01107 18 136 MYB Transcription Factor Family AT1G17950 76.471 4.11e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte16g01107 Myb_DNA-bind_6 6.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01107 K09422 - cit:102629366 327.791