Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01096 ATGGACGGTAGTTTATCAGAGTTATTTGAGGACAAAGAATTTGGAGACCCAAACTTCGGAGGAGATGATTTGTTTGCCCTTTTGGAGAGCTGGGATGGCGTCACCAACTTCCCTTCAATTGATGAACCGACTTTTGTTAACCCAAAAGAGAAGGAAGGGTTAGTGTCACATAAGTGTACTTCTTCCAGTACTACTCTACAAGAATACTCAGAAACTGAGCTCGAAAATTCATCAAAGTGCAAGAGACAAAAGCTTGCTGACACACCTAATTCCGAGGAAGCTAACACAGATGGACAGCAAAGGATGTCTCATATCACAGTGGAACGCAACCGAAGAAAGCAAATGAACGAGCATCTGTCTGTCCTGAGGTCTCTTATGCCTTGCTTTTATGTCAAAAGAGGGGATCAAGCATCGATAATTGGTGGTGTAGTTGATTACATCAATGAGCTGCAGCAAGTTCTACAATCCCTCGATGCCAAGAAACAAAGGAAAGTTTACAGTGAGGTTCTTAGCCCTAGATTTGTTTCAAGTCCAAGACATTCACCACTAAGTCCGAGAAAGCCGCCTCCAAGTCCTAGAATAAACTTACCCATCAGTCCAGGAACCCCACAGCCAATTAGTAGCCCTTACAGACCAAGGTTGCAACAAGGCTACCTCTCTCCCACGCTTGCCAGTTCCCTCGAACCATCTCCTACATCTTCTACTTCCTCCATTATTAATGATAGCGTCAATGAGCTTGTTGCTAACTCTAAGTCCGCCATTGCCAATGTGGAAGTTAAGTTTTCGGGTCCAAACCTTCTTTTGAAAACAGTATCTCCTCGTATACCAGGTCAAGCTATGAAAATCATTTCAGCCATTGAAGACCTCTCTCTTGAAATCCTCCATGCGAGCATTAGTACCGTTGAAGATACTCTTCTACATTCCTTCACTATCAAGGTATATCCTCTTACTAATTCTCTTTTATCATTCAGCGTGTGTGTGTGTGTGTGTGATTATAACCTCATCCTATTACTATATGCTACATAG 1026 0.4269 MDGSLSELFEDKEFGDPNFGGDDLFALLESWDGVTNFPSIDEPTFVNPKEKEGLVSHKCTSSSTTLQEYSETELENSSKCKRQKLADTPNSEEANTDGQQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQSLDAKKQRKVYSEVLSPRFVSSPRHSPLSPRKPPPSPRINLPISPGTPQPISSPYRPRLQQGYLSPTLASSLEPSPTSSTSSIINDSVNELVANSKSAIANVEVKFSGPNLLLKTVSPRIPGQAMKIISAIEDLSLEILHASISTVEDTLLHSFTIKVYPLTNSLLSFSVCVCVCDYNLILLLYAT* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01096 341 CDD bHLH_AtFAMA_like 102 173 - -
Pte16g01096 341 MobiDBLite consensus disorder prediction 57 73 - -
Pte16g01096 341 Pfam Helix-loop-helix DNA-binding domain 100 151 IPR011598 GO:0046983
Pte16g01096 341 Gene3D - 90 164 IPR036638 GO:0046983
Pte16g01096 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 174 IPR036638 GO:0046983
Pte16g01096 341 FunFam Transcription factor SPEECHLESS 91 165 - -
Pte16g01096 341 PANTHER TRANSCRIPTION FACTOR FAMA 5 314 IPR044283 GO:0003700|GO:0010052
Pte16g01096 341 MobiDBLite consensus disorder prediction 74 88 - -
Pte16g01096 341 SMART finulus 105 156 IPR011598 GO:0046983
Pte16g01096 341 MobiDBLite consensus disorder prediction 182 207 - -
Pte16g01096 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 150 IPR011598 GO:0046983
Pte16g01096 341 MobiDBLite consensus disorder prediction 174 212 - -
Pte16g01096 341 MobiDBLite consensus disorder prediction 57 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01096 Pte-Chr16 30467857 30469508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01096 1 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 50.418 1.69e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte16g01096 HLH 7.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01096 K20558 - rcu:8274388 374.4