Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01087 ATGAAGAAGAAGAATAGAGACATCTTGTTCATCTTTTCAGCTGTACTTATATTTTCAGCAACGCACACTCTTGTTACTGCTGACCTACAAGCAGATAAACAAGCCTTGCTTGAGTTTATTCAGAGAGTACCACATTCACGTCCTCTGAACTGGAATCAGAACTCCTCCATATGTACAAATTGGACAGGAGTGGCATGCAACGACGGCCAGTCAAGAGTTATAAGCCTTCGCTTACCAGGAATTGGATTGAAAGGTCTAATACCCCCAAACACTCTCACTCGGTTGTCAGCAATTCAGACACTCAGTCTGAGATCTAATGGTATATCAGGCCATTTCCCTTCTGATTTTTCCAAGCTTAAAAGTTTAACCTACCTTTATCTTGAATTCAATAACTTCTCTGGTTTGTTGCCTAGAGATTTTTCTGTTTGGAAGAATCTTACCGTTGCCAATTTATCAAACAACGCATTCAGTGGGAATATCCCTCCATCAATTTCAAACTTGACAAATCTCACATCTTTAGATCTTTCACACAACTTGCTTTCTGGTGAAATTCCTGATTTACAACTCCCCAGCCTGCAACAGTTCAGTTTAGCAAACAATATCCTCACGGGGGTTGTGCCTAAATCTCTTCAGAGATTTCCACAGCAGGCATTTTCTGGTAACAACCTTACTTCTCAATATGCTCTTCCTCCAGCTTATCCAATTCAACCACCAGGTGCTCAACCAGAAGAGAAAAGCAGAGAGCTAAGTGAACCTGCAATATTGGGTATTGTAATTGGTGGATGTGTACTGGCATTTTTTGTCACTGCTATTCTCATGATTGTTTGCTCCTCCAATAAAGGAAGTGAAGATACACCACCAAAAAAGAAGCCACAGAAAAAGGAAGTCCCCACAAGAAAAGCAGCATCTGCGAACCAAGATAAGAAAAATAGGCTGGTATTCTTTGAGGGATGTGATCTTGCATTTGACCTTGAGGACTTGTTGAGAGCATCAGCTGAGATTCTAGGAAAGGGTACCTTTGGAATGACGTATAGAGCTGGTTTAGAAGACTCAACCACAGTGGTGGTTAAGCGATTGAAAGAAGTAGCCGTTGGGAGACGAGATTTTGAACAGCAGATGGCAGTGGTAGGGAGAATTAAGCATGAGAATGTGGCAGCATTAAGGGCATATTACTATTCAAAGGATGAGAAACTCATTGTGTATGATTACTTTGACAAGGGCAGTGTCTCTGCATTATTACACGGAAATAGAGGTGAGGGAAGGACCCCTTTAGACTGGGATACTCGACTGAGCACTGCAATTGGTGCAGCTAAAGGCATTGCTCATATCCACGAGCAAAATGGTGGAAAACTTGTTCATGGAAACATAAAAGCATCAAACATTTTCCTAAACTCCCAAGGATATGGATGTGTATCTGAAGTTGGTTTGGCAACATTGATGAGTCCAATTTCCCCACCAGCACTTAGGTTTGCAGGATACCGTGCCCCAGAAGTAACAGACACCCGCAAATCAACACATCCTTCAGATGTCTTTAGTTATGGGGTGCTGTTGCTGGAGCTTCTCACAGGGAGATCCCCTATCCATGCCACAGGTGGTGAGGAGATTGTTCACTTGGTCAGATGGGTGCATTCCGTGGTCAGAGAAGAGTGGACTGCAGAAGTGTTTGATGTGGAGCTTCTGAGATATCCAAATATAGAGGAAGAAATGGTGCAAATGTTACAGATAGGAATGGCTTGTGTGGAAAAGATGCCAGAGCAGAGACCTAAAATGGTTGATGTTGTGAGGATGGTGGAGGAAATACGTCCAGTGGAAAGTGAGAATAAATCATTCTCAGCATCTACATCAGAATTTTCAACCCCAACAGCAGCAGCATTATCTCAAGCAATTCACATAAATGTGTCCTCTGTTCCCCCGTGA 1917 0.4262 MKKKNRDILFIFSAVLIFSATHTLVTADLQADKQALLEFIQRVPHSRPLNWNQNSSICTNWTGVACNDGQSRVISLRLPGIGLKGLIPPNTLTRLSAIQTLSLRSNGISGHFPSDFSKLKSLTYLYLEFNNFSGLLPRDFSVWKNLTVANLSNNAFSGNIPPSISNLTNLTSLDLSHNLLSGEIPDLQLPSLQQFSLANNILTGVVPKSLQRFPQQAFSGNNLTSQYALPPAYPIQPPGAQPEEKSRELSEPAILGIVIGGCVLAFFVTAILMIVCSSNKGSEDTPPKKKPQKKEVPTRKAASANQDKKNRLVFFEGCDLAFDLEDLLRASAEILGKGTFGMTYRAGLEDSTTVVVKRLKEVAVGRRDFEQQMAVVGRIKHENVAALRAYYYSKDEKLIVYDYFDKGSVSALLHGNRGEGRTPLDWDTRLSTAIGAAKGIAHIHEQNGGKLVHGNIKASNIFLNSQGYGCVSEVGLATLMSPISPPALRFAGYRAPEVTDTRKSTHPSDVFSYGVLLLELLTGRSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELLRYPNIEEEMVQMLQIGMACVEKMPEQRPKMVDVVRMVEEIRPVESENKSFSASTSEFSTPTAAALSQAIHINVSSVPP* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01087 638 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Pte16g01087 638 Pfam Leucine rich repeat 87 132 IPR001611 GO:0005515
Pte16g01087 638 Gene3D Phosphorylase Kinase; domain 1 294 403 - -
Pte16g01087 638 FunFam pollen receptor-like kinase 1 298 403 - -
Pte16g01087 638 SUPERFAMILY L domain-like 42 213 - -
Pte16g01087 638 Gene3D Ribonuclease Inhibitor 29 234 IPR032675 -
Pte16g01087 638 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Pte16g01087 638 Gene3D Transferase(Phosphotransferase) domain 1 404 621 - -
Pte16g01087 638 ProSiteProfiles Protein kinase domain profile. 329 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte16g01087 638 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 404 611 - -
Pte16g01087 638 PANTHER OS05G0588300 PROTEIN 10 609 - -
Pte16g01087 638 FunFam Probable inactive receptor kinase RLK902 29 175 - -
Pte16g01087 638 Pfam Leucine Rich Repeat 169 191 IPR001611 GO:0005515
Pte16g01087 638 MobiDBLite consensus disorder prediction 279 304 - -
Pte16g01087 638 SUPERFAMILY Protein kinase-like (PK-like) 333 598 IPR011009 -
Pte16g01087 638 MobiDBLite consensus disorder prediction 283 304 - -
Pte16g01087 638 ProSiteProfiles Leucine-rich repeat profile. 169 191 IPR001611 GO:0005515
Pte16g01087 638 Pfam Protein tyrosine and serine/threonine kinase 333 595 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01087 Pte-Chr16 30360226 30363380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01087 27 600 Receptor kinase-like Gene Family AT4G23740 59.492 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pte16g01087 PK_Tyr_Ser-Thr 4.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01087 - - qsa:O6P43_015051 863.603