Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01082 ATGCACTCAGGAAAGAATATAAACACATTAAGGAGATTTAGAAAATCATTCTCATCATTTGGAGTTAACAGTTTCATGGGCAGAAATGGTGGTTGTAGAAAGAAAATTCTTGATCCACAAGGGCCATTTCTTCAGAAATGGAATAAGATATTTGTATTGTCATGTATTATTGCTGTATCTATAGACCCTCTGTTCTTTTATGTTCCTATCATTGATGATGAAAATAAATGTCTGGGGTTGGATCATAAGATGGAGATCACAGCAACTGTTTTGCGATCTTTCTCAGATATTTTTTATATAACTCACATAATTTTCCAATTTCGAACTGGATTTATTGCTCCATCTTCTCGAGTATTTGGAAGAGGTGTACTAGTTGAAGATTCATGGGCAATTGCGCAGAGGTACTTGTCATCATACTTCTTTGTGGACATTCTTGCAGTTCTTCCTCTTCCACAGGTGGTGGTTCTCATTGTCATTCCAAAAATGAGAGGATTTACATCGTTGAATACAAAGAACTTGTTGAAATTTGTCGTGATCTTACAATATGTGCCAAGGTTCTTGCGAATAATTCCATTGTATAAAGAAGTCACAAGGACATCTGGCATTCTTACTGAAACTGCATGGGCAGGAGCAGCATTCAATCTCTTCCTCTACATGCTTGCAAGTCATGTTTTGGGTGCTTTTTGGTATTTGTTCTCAATAGAAAGAGAAACAACATGTTGGCAAGAAGCCTGCCGTGGGAACTCCACTTTTTGTGACATAGCATCTTTATACTGCGACAGTTTGCGAGGAAGAGATGCAACAAAAAATGTGTTCTTGAATTCTTCTTGCCCAATTTTTGAACCAGATCCGACCCTGTTTGATTTTGGAATGTTCCTTGATGCCCTTGGTTCTGGTATTGTGGAGTCCAAAGAGTTTCCAGAGAAGTTCTTTTACTGCTTTTGGTGGGGCCTAAGGAATCTAAGTTCTCTTGGCCAAAACCTCAAAACAAGTACTTACGTTTGGGAAATATGCTTTGCAGTATTCATTGCTATTGCTGGTTTGGTGTTATTCTCGTTCCTCATTGGGAACATGCAGACATACTTACAATCAACAACTACAAGGTTGGAGGAGATGAGAGTCAAAAGGAGGGATGCAGAACAGTGGATGTCTCATCGATTACTCCCAGAAAATTTGAGAGAACGAATCAGGCGGCATGAACAATACAAATGGCAAGAAACTAGGGGTGTAGATGAAGAGAATCTGATCCATAATCTTCCCAAGGACCTCAGAAGGGACATAAAGCGCCATCTTTGTCTGGCTTTGCTGATGAGAGTGCCTATGTTTGAGAAAATGGACGACCAGTTATTGGATGCAATGTGTGACCGACTCAAGCCAGTGCTTTACACAGAAGAGAGCTGCATTGTGAGGGAGGGAGATCCAGTTGATGAGATGCTCTTTATAATGCGAGGCAAGGTTTTGACCATGACAACCAATGGTGGAAGAACTGGATTCTTCAACTCGGAACATCTCAAGGCTGGTGATTTCTGTGGAGAAGAACTTCTCACTTGGGCTCTGGATCCTCATACCTCAGCAAACCTTCCAATTTCAACTAGGACTGTCCAAACTCTAAGTGAAGTTGAAGCCTTTGCCTTGAAGGCAGATGACTTCAAGTTTGTGGCTTCTCAGTTCAGGAGACTTCACAGCAAGCAGCTCCGACACACTTTCAGATTTTACTCACAGCAGTGGAGAACATGGGCAGCATGTTTCATACAAGCAGCTTGGAGGCGCTACAGCAAGAAGAAGCTGGAAGAGTCCCTTAAAGAAGAGGAGAACAGGCTGCAAAATGCATTGGCTAAGGCAGGGACTAGCTCACCAAGTCTGGGAGCTACCATATATGCCTCCAGATTTGCTGCTAATGCTCTTCGTGCTATACGGCGCAAAGGTTCACGTAATGCAAGGGTACCAGAGAGAATACCACCCATTCTACTTCGGAAACCTGCAGAACCTGACTTTACAGCTGAAGATTAA 2010 0.4189 MHSGKNINTLRRFRKSFSSFGVNSFMGRNGGCRKKILDPQGPFLQKWNKIFVLSCIIAVSIDPLFFYVPIIDDENKCLGLDHKMEITATVLRSFSDIFYITHIIFQFRTGFIAPSSRVFGRGVLVEDSWAIAQRYLSSYFFVDILAVLPLPQVVVLIVIPKMRGFTSLNTKNLLKFVVILQYVPRFLRIIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGAFWYLFSIERETTCWQEACRGNSTFCDIASLYCDSLRGRDATKNVFLNSSCPIFEPDPTLFDFGMFLDALGSGIVESKEFPEKFFYCFWWGLRNLSSLGQNLKTSTYVWEICFAVFIAIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRERIRRHEQYKWQETRGVDEENLIHNLPKDLRRDIKRHLCLALLMRVPMFEKMDDQLLDAMCDRLKPVLYTEESCIVREGDPVDEMLFIMRGKVLTMTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHTSANLPISTRTVQTLSEVEAFALKADDFKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLKEEENRLQNALAKAGTSSPSLGATIYASRFAANALRAIRRKGSRNARVPERIPPILLRKPAEPDFTAED* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01082 669 SMART cnmp_10 441 572 IPR000595 -
Pte16g01082 669 Pfam Ion transport protein 47 368 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pte16g01082 669 Pfam Cyclic nucleotide-binding domain 462 553 IPR000595 -
Pte16g01082 669 Coils Coil 593 613 - -
Pte16g01082 669 Gene3D - 49 365 - -
Pte16g01082 669 FunFam Cyclic nucleotide-gated ion channel 1 368 432 - -
Pte16g01082 669 SUPERFAMILY cAMP-binding domain-like 370 563 IPR018490 -
Pte16g01082 669 SUPERFAMILY Voltage-gated potassium channels 38 363 - -
Pte16g01082 669 FunFam Cyclic nucleotide-gated ion channel 1 439 557 - -
Pte16g01082 669 Gene3D Jelly Rolls 439 559 IPR014710 -
Pte16g01082 669 ProSiteProfiles cAMP/cGMP binding motif profile. 441 551 IPR000595 -
Pte16g01082 669 Gene3D Helix hairpin bin 367 432 - -
Pte16g01082 669 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 31 665 - -
Pte16g01082 669 CDD CAP_ED 441 572 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01082 Pte-Chr16 30311590 30315570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01082 10 670 Ion Channels AT5G53130 80.694 0.0 1095
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01082 K05391 - qsa:O6P43_019902 1129.78