Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01072 ATGATAATCAAGCGCAACCTAAAATCCCAAATGCCGAGTCTTAAACGGTGCAAACTCCCTAACTCGGCTGGTGATGGCGATAAACCCTCTGCTGCTCGGAAGAAGAGGAGGACTAATAGATATTACCCTTTGGATATCCTCACTGAGGTCGCCGCCGGTGTAATTCCGGTCGGTATTCGTGGTGCTTTGAGTTCTGTTGTGGCAGACAAGGGTTCGGCTGCATCGTTGCGCACAGAAGTATCGTGCTCTCCTGGTGAGGTGCTGTCGCAATCCAATACCACTCGGGACTCTGTTGAGCCAGCTAACGTGAATTGTACCGTGGAGGTTTCACGACCACCCCTAGTGAGGACCTCAAGGGGTCGAGTTCAGGTACTACCTTCGCGGTTCAATGACTCGGTTATAGAGAATTGGAGGAAAGACAGTAAGACAAGTTTACGTGATCATGGTTTTGACGATGAAAGTGAACGCCTAAAGGACAATAAGTTTAGTTTTAGAGTACCAAAGACGTGTAGCCAGGATCAAGATGCAAAGAAAATTGTTAAGAAAGATGAGGGGAATGGTCACAAGTTCCGTAAATATGCTACATTGTGTGAAGAAGACGAAGCAGTAGGAAGGCGTGTAGGTTCTAAGGACTCTGAAACATATAGGAGATATTCGAGTTCGAGGCGTACCCTTACATCAATTAATGAGCAATGGGATGAGGTTGAAGACTGCGTTCTCGTGGATACAGAGGAGGAAGATGATGCTCGAGGTAACAAGAGAATTTCGAAGGACGGTAACGACAAGAGGAAAAACCAATACGGCCTTGAAGATTTCCATCCGGGGGACATAGTGTGGGCAAAACCAAGTAAAAAAGAGCCCTTTTGGCCTGCTATCGTAATTGACCCAATTTCACAAGCACCAGAATTAGTTTTGAGATCTTGTATGGCTAATGCAGTTTGTGTGATGTTCTTTGGTTGCTCGGGTAATGGAAGTCAAAGGGATTATGCATGGGTGAAGCATGCAATGATTTTTCCGTTTTCAGATTACGTAGACAGATTTCAGGGTCAGGCTGCATTGGATGACTGCCAACCTTCCGAATTTCACATGGCAATGGAGGAGGCATTTTTAGCAGAAGAGGGCTTTAGAGAAAAGCTTATATATGACATTAACTTGGCAGTTGGCAACACTGATGAATCCCGATTTAGAGGCACCCAAGAGGCCACTGGTTCAAACCTAGACGCAGACTGTTATCACATTAACAAGGCAAATTCAAGACCTTGTGAAGGCTGTGGATTGATACTTCCTTGGAAGTCTTCAAATAACACAAGTTCTTCTCCTGGCGGCCAGTTTTTGTGTAAAAAATGCACCAAGTTAACAAACCCAAAGCATCATTGTGGCATATGCAAGAAGTTTTGGAACCATTCTGACAGTGGGAGTTGGGTACGATGTGATGGATGTAAGGTTTGGGTGCATGCTGAATGTGACAAAATTCCTAGCGACCTTTTCAAGAATCTGGGAGGCACTGATTATTTCTGCCCAACTTGCAAAGTGAAGTTTGATTTTGAATTATCAGATTCAGAAAAGCCACAGGCAAAAGTCAAATGCGAGAAAAATAATGCAAAAGTGGTGCTGAGTAACAAGGTTACCGTTCTTTGCAATGGGGTTGAAGGCATATATTATCCAAGCCTGCATTCAGTGGTGTGTAAATGTGGTTTCTGCGGAACAGAAAAGCAAGCACTTAGTGAATGGAAAAGGCATACAGGTTCTAAGTCAAGAAATTGGAGGACTAGTGTCACCGTTAAAGATTCCAAGTTGCCTCTGGAACAATGGATGCTGCAATTGGCAGAATTCCATGCAAATGCTATTGTCTCTGCGAAACCTAAACGGCCATCTTTGAGAGAAAGAAAGCAAAAGTTGCTCAAATTTTTGCGAGAGAAATATGAACCTGTTCATGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATCATTTGCAACAGATGTCAAATTGCCGTCCATCAAGAATGCTATGGGGCAAGAAATGTCCAAGATTTCACATCATGGGTTTGCAAAGCATGTGAAACACCTGGCATTCGGCGGGAATGTTGTCTTTGCCCTGTCAAAGGTGGTGCTTTAAAGCCCACCGATGTTGAAACATTGTGGGTTCATGTAACATGCGCTTGGTTCCGTCCAGAAGTATCCTTCGCAAGTGATGAGAAGATGGAACCTGCTTTAGGAATCTTGAGTATTCCCTCCAATTCTTTTGTGAAGATTTGTGTTATCTGCAAGCAAATTCATGGGTCATGCACACAATGTTGCAAGTGTTCAACTTATTACCATGCCATGTGTGCATCAAGGGCGGGATATCGAATGGAGCTGCATTGCTTAGAGAAAAATGGTAAACAAATCACGAAAATGATTTCTTTCTGCGCTTATCACAGGGCTCCAAACCCAGACACTGTTCTAATCATACAAACCCCATTTGGCATCTTCTCTGCCAAAAATCTTGTCCAAACTAAGAAGAAGGCGGGCTCTAGGCTAATCTCATCTAAAAGAGCAACTGTCAAAGAGGTTGCTACTACATATAATAATGAGTTAGAACCATTTTCTGCTGCCAAGTGTCGTGTCTTCAAGAGAACCAACACTAGCAAAAAGCGAGAAATGGATGAAGCTGTTGCCCATAGAGTGAAGCATCATAGCCAACATCCTTGGGATGCAATACAGAAATTAAATACATACACTGTAGTTTTTTCTTCTCTTCAACTTTGCTTAAACATGTGCGGACAGAGGACTGAAAAGGAGCGGACTTGCTTTGGGAGATCTGGCATCCATGGATGGGGCCTCTTTGCACGCAGAAACATTCAAGAAGGAGAGATGGTGATTGAATATCGCGGTGAGCAGGTGAGGCGTAGCATTGCAGATCTGAGGGAGGCACGTTACAGATTGGAAGGCAAAGACTGCTATCTGTTCAAGATCAGTGAAGAAGTAGTGGTGGACGCTACTGACAAAGGAAATATTGCCCGCCTGATTAACCATTCTTGCATGCCAAACTGCTATGCAAGGATTATGAGTGTGGGTGATGATGAAAGCAGGATTGTACTCATTGCCAAGACTAACGTACCTGCGGGTGATGAGCTAACGTATGACTACTTATTTGATCCAGATGAGCCTGACGAATTTAAAGTCCCTTGTCTGTGTAAAGCTCCAAACTGCCGCCAGTTCATGAATTAG 3246 0.4378 MIIKRNLKSQMPSLKRCKLPNSAGDGDKPSAARKKRRTNRYYPLDILTEVAAGVIPVGIRGALSSVVADKGSAASLRTEVSCSPGEVLSQSNTTRDSVEPANVNCTVEVSRPPLVRTSRGRVQVLPSRFNDSVIENWRKDSKTSLRDHGFDDESERLKDNKFSFRVPKTCSQDQDAKKIVKKDEGNGHKFRKYATLCEEDEAVGRRVGSKDSETYRRYSSSRRTLTSINEQWDEVEDCVLVDTEEEDDARGNKRISKDGNDKRKNQYGLEDFHPGDIVWAKPSKKEPFWPAIVIDPISQAPELVLRSCMANAVCVMFFGCSGNGSQRDYAWVKHAMIFPFSDYVDRFQGQAALDDCQPSEFHMAMEEAFLAEEGFREKLIYDINLAVGNTDESRFRGTQEATGSNLDADCYHINKANSRPCEGCGLILPWKSSNNTSSSPGGQFLCKKCTKLTNPKHHCGICKKFWNHSDSGSWVRCDGCKVWVHAECDKIPSDLFKNLGGTDYFCPTCKVKFDFELSDSEKPQAKVKCEKNNAKVVLSNKVTVLCNGVEGIYYPSLHSVVCKCGFCGTEKQALSEWKRHTGSKSRNWRTSVTVKDSKLPLEQWMLQLAEFHANAIVSAKPKRPSLRERKQKLLKFLREKYEPVHAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVCKACETPGIRRECCLCPVKGGALKPTDVETLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYYHAMCASRAGYRMELHCLEKNGKQITKMISFCAYHRAPNPDTVLIIQTPFGIFSAKNLVQTKKKAGSRLISSKRATVKEVATTYNNELEPFSAAKCRVFKRTNTSKKREMDEAVAHRVKHHSQHPWDAIQKLNTYTVVFSSLQLCLNMCGQRTEKERTCFGRSGIHGWGLFARRNIQEGEMVIEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVPAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRQFMN* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01072 1081 SMART PHD_3 458 510 IPR001965 -
Pte16g01072 1081 SMART PHD_3 652 699 IPR001965 -
Pte16g01072 1081 SMART PHD_3 763 819 IPR001965 -
Pte16g01072 1081 Pfam PWWP domain 275 369 IPR000313 -
Pte16g01072 1081 CDD PWWP_AtATX3-like 275 377 - -
Pte16g01072 1081 CDD PHD_TCF19_like 459 509 - -
Pte16g01072 1081 Pfam PHD-finger 665 699 - -
Pte16g01072 1081 ProSiteProfiles SET domain profile. 939 1056 IPR001214 GO:0005515
Pte16g01072 1081 SMART set_7 939 1062 IPR001214 GO:0005515
Pte16g01072 1081 ProSitePatterns Zinc finger PHD-type signature. 653 698 IPR019786 -
Pte16g01072 1081 FunFam Histone-lysine N-methyltransferase 913 1081 - -
Pte16g01072 1081 FunFam Histone-lysine N-methyltransferase 702 821 - -
Pte16g01072 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 820 IPR013083 -
Pte16g01072 1081 Pfam PHD-zinc-finger like domain 706 818 - -
Pte16g01072 1081 SUPERFAMILY FYVE/PHD zinc finger 456 513 IPR011011 -
Pte16g01072 1081 SUPERFAMILY FYVE/PHD zinc finger 650 715 IPR011011 -
Pte16g01072 1081 ProSiteProfiles Zinc finger PHD-type profile. 456 512 IPR019787 -
Pte16g01072 1081 CDD SET_SETD1-like 934 1077 - -
Pte16g01072 1081 ProSiteProfiles Zinc finger PHD-type profile. 650 701 IPR019787 -
Pte16g01072 1081 Pfam PHD-finger 459 511 IPR019787 -
Pte16g01072 1081 SUPERFAMILY Tudor/PWWP/MBT 271 378 - -
Pte16g01072 1081 CDD ePHD_ATX3_4_5_like 707 818 IPR041955 -
Pte16g01072 1081 FunFam Histone-lysine N-methyltransferase 640 701 - -
Pte16g01072 1081 ProSiteProfiles PWWP domain profile. 274 343 IPR000313 -
Pte16g01072 1081 MobiDBLite consensus disorder prediction 13 36 - -
Pte16g01072 1081 SUPERFAMILY SET domain 927 1077 IPR046341 -
Pte16g01072 1081 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1081 IPR025780 -
Pte16g01072 1081 CDD PHD_ATX3_4_5_like 652 698 IPR042011 -
Pte16g01072 1081 Gene3D SET domain 836 1081 IPR046341 -
Pte16g01072 1081 ProSiteProfiles Extended PHD (ePHD) domain profile. 704 819 IPR034732 -
Pte16g01072 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 701 IPR013083 -
Pte16g01072 1081 ProSiteProfiles Post-SET domain profile. 1065 1081 IPR003616 -
Pte16g01072 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 454 513 IPR013083 -
Pte16g01072 1081 SMART PWWP_4 272 341 IPR000313 -
Pte16g01072 1081 Pfam SET domain 950 1055 IPR001214 GO:0005515
Pte16g01072 1081 Gene3D - 268 377 - -
Pte16g01072 1081 PANTHER PHD FINGER PROTEINS 89 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01072 Pte-Chr16 30149924 30158764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01072 653 818 C2H2 Transcription Factor Family AT3G14740 32.370 2.95e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte16g01072 zf-HC5HC2H_2 2e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01072 - - qsa:O6P43_015012 1651.34