Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01063 ATGTCACCAATCTCCCCAAACAAAATGAACTACGGCAGACTAGGACCGTCAGACCCCGGGGGCTCCTCCAGGTCCACTTTCTCTGACGTGAACGCAACCTCTATTCCAGCTACATCCAAGAGCAGGAAGAAGCTCATCTTCGTCTCCCTCCTCGCCATTGTTTTGATCGTTGTTTCTGCTGTGTCAGCAGTGGTTGTGGTGAATGGTCGGGATCGGGGGAAGAGTGGTTCCGGTTCGGGTATCCGTCAGCCCACACAAGCCATCTCTCGGACATGTAGCAAGACGCTTTATCCTTCTTTGTGTGTGAACTCGCTTCTGGAATTCCCGGGTTCAACGGAAGCTTCAGAGCACAGCCTCGTCCACATTTCATTTAACATGACCTTGCAGCACCTGAACAGAGCTCTCTACTTTTCTTCTGGGATATCCAATGTCCAGATGGATCCACGTGTACGGTCAGCATACGAAGACTGCCTCGAGCTCCTGGACGCTTCTGTGGACGCGCTTACACGCTCCCTCACCACCGTGGCTCCTTCACCATCCGAATCCGAACCCGATGCTTCAACCCAGGACGTGCTTACGTGGCTGAGCACTGCCCTGACGAACCAGGACACATGTACGGAAGGATTCTTGGAGTTGAGTGGGGTCGTGAAGGATCAGATGGCGACTCAGCTGAAGAACTTGTCGGAATTGGTGAGCAATTGTCTTGCGATTTATTCGGAGAGCGGCAACGGCGACTTTTCAGGTATACCGATACAAAATCGCCGCAGACTTATGGAAGAGAATGCCCGTGGCTCGGGCGAGAAAATCGGCGAGTTGCCGGAATGGGTAAGTTCTAGAGACCGGAAATTGTTGGATTTGCCAGCATCTGCGATTCAGGCTGATATCGTGGTGTCGGCAGATGGGAAGGGTACTTGTAAGACAATCGGAGAAGCCATTAAAAAGGCACCAGAGAACAGTAAACGACGAACCATCATCTACGTGAGGGCAGGAAGGTATGAAGAGAAAAATCTGAAAATAGGAAGGAAGAAAAAGAACTTGATGTTCATAGGAGACGGAAAGGGTAAAACAGTCATAACGGGTAAAAAGAATGTCGTCGATGGCATGACGACCTTCCACACTGCCTCCTTTGGTAATTTCTCTTTTTCCTTTTGCACTATTTTCTACTATACTCTAATGGTTTTCATCTTAGATAATATTTACATTAGACAGCAATAA 1215 0.4914 MSPISPNKMNYGRLGPSDPGGSSRSTFSDVNATSIPATSKSRKKLIFVSLLAIVLIVVSAVSAVVVVNGRDRGKSGSGSGIRQPTQAISRTCSKTLYPSLCVNSLLEFPGSTEASEHSLVHISFNMTLQHLNRALYFSSGISNVQMDPRVRSAYEDCLELLDASVDALTRSLTTVAPSPSESEPDASTQDVLTWLSTALTNQDTCTEGFLELSGVVKDQMATQLKNLSELVSNCLAIYSESGNGDFSGIPIQNRRRLMEENARGSGEKIGELPEWVSSRDRKLLDLPASAIQADIVVSADGKGTCKTIGEAIKKAPENSKRRTIIYVRAGRYEEKNLKIGRKKKNLMFIGDGKGKTVITGKKNVVDGMTTFHTASFGNFSFSFCTIFYYTLMVFILDNIYIRQQ* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01063 404 PANTHER PECTINESTERASE 57 377 - -
Pte16g01063 404 FunFam Pectinesterase 84 241 - -
Pte16g01063 404 SUPERFAMILY Pectin lyase-like 289 380 IPR011050 -
Pte16g01063 404 NCBIfam pectinesterase inhibitor domain 75 239 IPR006501 GO:0004857
Pte16g01063 404 Pfam Pectinesterase 294 382 IPR000070 GO:0030599|GO:0042545
Pte16g01063 404 CDD PMEI-like_3 92 237 - -
Pte16g01063 404 Gene3D - 288 403 IPR012334 -
Pte16g01063 404 MobiDBLite consensus disorder prediction 1 30 - -
Pte16g01063 404 Pfam Plant invertase/pectin methylesterase inhibitor 87 237 IPR006501 GO:0004857
Pte16g01063 404 SMART PMEI_2 83 237 IPR006501 GO:0004857
Pte16g01063 404 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 86 239 IPR035513 -
Pte16g01063 404 Gene3D Invertase/pectin methylesterase inhibitor family protein 85 240 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01063 Pte-Chr16 29992449 29996242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01063 9 376 Carbohydrate Esterase AT5G53370 54.717 1.30e-130 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01063 - - qsa:O6P43_019935 451.44