Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01019 ATGGCGGTTGCTGAGAATGCTGGGGCTAAAATCGGCTCCTCCAATCAAAATTTGGACGGCAGTGTAGTATCTTCGGAGACAACTGGACCTGATGCTGTTGAGAAATCAAAACAAAGAGCTGATTTCTTGAGAACGGGGGTTGACACACCCGACAGCGGCGATCAGAACGTGGAGGTGTTGTCAGAGCAAGATGGAGCTCAGGACACTTCGTCTGTGACTAAGGTTGCCCAGATGCACAATGGGTTTGACTCCAACGGTGTCCAGAACCAGCAGATGTCTGGCAAAAATGGTGGCTACGGGATAAATCAAATCTCTAATGGGGTCAGAAATGGAACTGATGGAGACGAGAATTTCAAGCGTGATATCAGGGACTTAGCGGAATTGCTATCCAAGTTGAATCCTATGGCTGAGGAGTTTGTGCCTCCATCCTACGCAAAGAATCAAGGCTATTTTGGAGCTGCTGCTGGAGCTTTTGGTTACGCTTTACTTCAAACTGATATTGGCAATGCTAATGGTTCAATTAATAGAAGGAGGAAGAATGGCTATAATCAGGGAAAGCGAAGGCTATATCATAAAATGGACATGGATAAGCGAGAAGAGATGATTAGGAAGACAGTTTATGTGTCTGACATTGATCAACAGGTTACTGAAGAGCAGTTAGCAAACCTCTTTCTCAATTGTGGCCAGGTTGTTGATTGCCGTGTTTGTGGTGATCCAAATTCTGTCCTTCGCTTTGCTTTTGTTGAGTTCACTGATGAAGAAGGTGCAGGGGCTGCTTTGAGCCTATCTGGAACCATGCTTGGGTATTACCCAGTTAGAGTGCTGCCTTCCAAAACTGCAATTGCACCTGTCAATCCATCATTCTTACCCAGGTCTGAAGATGAGCGAGAGATGTGTTCAAGAACCATATACTGTACAAACATTGACAAGAAGGTGACTCAAGCAGATGTCAAACTCTTCTTTGAATCACTCTGTGGGGAGGTTCAACGCTTGAGGCTTCTTGGTGATTATCATCATTCTACACGCATCGCTTTTGTTGAGTTCACAATGGCTGAAAGTGCCATTGCTGCTCTTAACTGCAGTGGAGTGGTTCTGGGTTCCCTCCCTATAAGGGTAAGCCCGTCCAAGACACCCGTGAGGTCACGTGCACCCCGTCCTTCAATGCACTGA 1170 0.4615 MAVAENAGAKIGSSNQNLDGSVVSSETTGPDAVEKSKQRADFLRTGVDTPDSGDQNVEVLSEQDGAQDTSSVTKVAQMHNGFDSNGVQNQQMSGKNGGYGINQISNGVRNGTDGDENFKRDIRDLAELLSKLNPMAEEFVPPSYAKNQGYFGAAAGAFGYALLQTDIGNANGSINRRRKNGYNQGKRRLYHKMDMDKREEMIRKTVYVSDIDQQVTEEQLANLFLNCGQVVDCRVCGDPNSVLRFAFVEFTDEEGAGAALSLSGTMLGYYPVRVLPSKTAIAPVNPSFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVVLGSLPIRVSPSKTPVRSRAPRPSMH* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01019 389 CDD RRM2_CID8_like 297 378 IPR034825 -
Pte16g01019 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 268 IPR000504 GO:0003723
Pte16g01019 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 370 IPR000504 GO:0003723
Pte16g01019 389 SMART rrm1_1 302 373 IPR000504 GO:0003723
Pte16g01019 389 SMART rrm1_1 205 275 IPR000504 GO:0003723
Pte16g01019 389 CDD RRM1_CID8_like 202 281 IPR034823 -
Pte16g01019 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 377 IPR000504 GO:0003723
Pte16g01019 389 SUPERFAMILY RNA-binding domain, RBD 191 280 IPR035979 GO:0003676
Pte16g01019 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 279 IPR000504 GO:0003723
Pte16g01019 389 Pfam Ataxin-2 C-terminal region 129 143 IPR009818 -
Pte16g01019 389 Gene3D - 287 383 IPR012677 -
Pte16g01019 389 Gene3D - 166 281 IPR012677 -
Pte16g01019 389 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 127 382 - -
Pte16g01019 389 MobiDBLite consensus disorder prediction 1 56 - -
Pte16g01019 389 MobiDBLite consensus disorder prediction 9 31 - -
Pte16g01019 389 SUPERFAMILY RNA-binding domain, RBD 290 383 IPR035979 GO:0003676
Pte16g01019 389 FunFam Polyadenylate-binding protein-interacting protein 10 295 373 - -
Pte16g01019 389 FunFam Polyadenylate-binding protein-interacting protein 11 168 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01019 Pte-Chr16 29615852 29621564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01019 203 365 Eukaryotic Initiation Factors Gene Family AT1G34140 26.946 1.22e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01019 - - qsa:O6P43_014935 602.053