Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte16g01019 | ATGGCGGTTGCTGAGAATGCTGGGGCTAAAATCGGCTCCTCCAATCAAAATTTGGACGGCAGTGTAGTATCTTCGGAGACAACTGGACCTGATGCTGTTGAGAAATCAAAACAAAGAGCTGATTTCTTGAGAACGGGGGTTGACACACCCGACAGCGGCGATCAGAACGTGGAGGTGTTGTCAGAGCAAGATGGAGCTCAGGACACTTCGTCTGTGACTAAGGTTGCCCAGATGCACAATGGGTTTGACTCCAACGGTGTCCAGAACCAGCAGATGTCTGGCAAAAATGGTGGCTACGGGATAAATCAAATCTCTAATGGGGTCAGAAATGGAACTGATGGAGACGAGAATTTCAAGCGTGATATCAGGGACTTAGCGGAATTGCTATCCAAGTTGAATCCTATGGCTGAGGAGTTTGTGCCTCCATCCTACGCAAAGAATCAAGGCTATTTTGGAGCTGCTGCTGGAGCTTTTGGTTACGCTTTACTTCAAACTGATATTGGCAATGCTAATGGTTCAATTAATAGAAGGAGGAAGAATGGCTATAATCAGGGAAAGCGAAGGCTATATCATAAAATGGACATGGATAAGCGAGAAGAGATGATTAGGAAGACAGTTTATGTGTCTGACATTGATCAACAGGTTACTGAAGAGCAGTTAGCAAACCTCTTTCTCAATTGTGGCCAGGTTGTTGATTGCCGTGTTTGTGGTGATCCAAATTCTGTCCTTCGCTTTGCTTTTGTTGAGTTCACTGATGAAGAAGGTGCAGGGGCTGCTTTGAGCCTATCTGGAACCATGCTTGGGTATTACCCAGTTAGAGTGCTGCCTTCCAAAACTGCAATTGCACCTGTCAATCCATCATTCTTACCCAGGTCTGAAGATGAGCGAGAGATGTGTTCAAGAACCATATACTGTACAAACATTGACAAGAAGGTGACTCAAGCAGATGTCAAACTCTTCTTTGAATCACTCTGTGGGGAGGTTCAACGCTTGAGGCTTCTTGGTGATTATCATCATTCTACACGCATCGCTTTTGTTGAGTTCACAATGGCTGAAAGTGCCATTGCTGCTCTTAACTGCAGTGGAGTGGTTCTGGGTTCCCTCCCTATAAGGGTAAGCCCGTCCAAGACACCCGTGAGGTCACGTGCACCCCGTCCTTCAATGCACTGA | 1170 | 0.4615 | MAVAENAGAKIGSSNQNLDGSVVSSETTGPDAVEKSKQRADFLRTGVDTPDSGDQNVEVLSEQDGAQDTSSVTKVAQMHNGFDSNGVQNQQMSGKNGGYGINQISNGVRNGTDGDENFKRDIRDLAELLSKLNPMAEEFVPPSYAKNQGYFGAAAGAFGYALLQTDIGNANGSINRRRKNGYNQGKRRLYHKMDMDKREEMIRKTVYVSDIDQQVTEEQLANLFLNCGQVVDCRVCGDPNSVLRFAFVEFTDEEGAGAALSLSGTMLGYYPVRVLPSKTAIAPVNPSFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVVLGSLPIRVSPSKTPVRSRAPRPSMH* | 390 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte16g01019 | 389 | CDD | RRM2_CID8_like | 297 | 378 | IPR034825 | - | |
Pte16g01019 | 389 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 206 | 268 | IPR000504 | GO:0003723 | |
Pte16g01019 | 389 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 303 | 370 | IPR000504 | GO:0003723 | |
Pte16g01019 | 389 | SMART | rrm1_1 | 302 | 373 | IPR000504 | GO:0003723 | |
Pte16g01019 | 389 | SMART | rrm1_1 | 205 | 275 | IPR000504 | GO:0003723 | |
Pte16g01019 | 389 | CDD | RRM1_CID8_like | 202 | 281 | IPR034823 | - | |
Pte16g01019 | 389 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 301 | 377 | IPR000504 | GO:0003723 | |
Pte16g01019 | 389 | SUPERFAMILY | RNA-binding domain, RBD | 191 | 280 | IPR035979 | GO:0003676 | |
Pte16g01019 | 389 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 204 | 279 | IPR000504 | GO:0003723 | |
Pte16g01019 | 389 | Pfam | Ataxin-2 C-terminal region | 129 | 143 | IPR009818 | - | |
Pte16g01019 | 389 | Gene3D | - | 287 | 383 | IPR012677 | - | |
Pte16g01019 | 389 | Gene3D | - | 166 | 281 | IPR012677 | - | |
Pte16g01019 | 389 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR | 127 | 382 | - | - | |
Pte16g01019 | 389 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
Pte16g01019 | 389 | MobiDBLite | consensus disorder prediction | 9 | 31 | - | - | |
Pte16g01019 | 389 | SUPERFAMILY | RNA-binding domain, RBD | 290 | 383 | IPR035979 | GO:0003676 | |
Pte16g01019 | 389 | FunFam | Polyadenylate-binding protein-interacting protein 10 | 295 | 373 | - | - | |
Pte16g01019 | 389 | FunFam | Polyadenylate-binding protein-interacting protein 11 | 168 | 281 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte16g01019 | Pte-Chr16 | 29615852 | 29621564 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte16g01019 | 203 | 365 | Eukaryotic Initiation Factors Gene Family | AT1G34140 | 26.946 | 1.22e-10 | 60.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte16g01019 | - | - | qsa:O6P43_014935 | 602.053 |