Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01013 ATGGGTGAGGTTGCTGTAACTAGAAACGATTTGGGAGTGAAGAGGCTGGAGAGGGAAGCAGAGAACACAGAGGAAGAGTGTGCGGTTGTAAAGCAAGGTGAAGATTCAAGTGGATTGGTGATCATGTGGGAAAAGTTATTGAAGAGAAGGATGCTGAGGGTCTTATTGGTTGAAGCTGATGATTCCACAAGGCAAGTGATCGCTGCTCTGCTAAGGAAATGTAGTTACAAAGTGGCTGCTGTTTCTGATGGGTTAAAGGCATGGGAAGTACTGAAAGGTAGACCACATAACATTGATCTGATATTGACAGAAGTAGATTTGCCAGCAATTTCTGGATTTGCACTTCTCACATTAATCATGGAGCATGAGATTTGCAAAAACATTCCTGTCATAATGATGTCATCACATGATTCCATCAGCACAGTCTATAATTGCATGTTGAGAGGCGCTGCTGACTATCTTGTTAAGCCGATTAGGAAAAATGAGCTAAGCAATCTGTGGCAGCATGTGTGGAGAAAACAAACTTCAATGGATGTGTCAAATGGTCCCCAAGATGAGAGTGTAGCACAACAGAAGGTTGAAGGAACTTGCGAGAATAATACTGCAAGTAATCATTCAAGTGGTGATCTGGCATGTATCCAACGAAACAAGGAATTAATTGAAAAAGGAAGTGATGCACAGAGCTCGTGTACAAAGCCTGACTTGGAAGCCAAGAGTACTCCGGCTGAAGATCTGGAGGAGCATGCTCAATCGAAGTACAACAAAGCATATCTTAGTGTGAAGAAAGTGCAAGAGAATGAACCTTCCATCAACTTAGGTCGCAAAGGAAGCAGCCACGACAGTCATACCATAGGATTGTCCTTAGGCATTAGCAACAATGGCGATACTGCTGCAACTCTTGGCAGAGACTCTGATTCTGTATATCCCAAGGCGAGGACTAGCAACCTCAGTGAAGCTTGTGACAATAACAATGCCCTTGTCAACTCTTCTAGGGAGGCAACTGACTTCACATTCCATACTTATCCCACCTGTGAGCCGAAAAATTCTCCTTCAATCAGTGAAACAAGAAAGATCGCTCCTTCTTCAGAGTTGAAACTTTCCTTGAGAAGGTCTGAGTCCCACAGTTTTGAGAATGAAGACATTGAAGAGAAGAACACTCTTGTGCATTCCAATGCCTCAGCTTTCAAGAGGTACAATAGCAGACAAATGCAAACCTCACCTAGGGCTGGGAAACACCAGATAGGGAGTGGCACTGAGTCCGAGAAAAACACATCCTACATGTTCACTGGCTACAACTCTGAAACTTCAGCACCTAGTTTGCAAAGAAGCTTCTCTCCTGCAAACGTGCACCCGAAAGAATCTGATATAGCTACTTCACAACTTCAACATCGAGTCTTCCCCATTGCAGTTCCAGTAGAAGGCATAAGATACAACGATATGAGCCAGGCCTTTGGATCTGTACTTCCTCCAGTCTTTTATACACAGTCAGGCGGTCCATTACCTATGCCAAGCTCTGTTGCAGTTGCTCATGCAGAACCCTCCTTTGCAGCGGACATCTTTCACCATTCAAATATTGAAGATCATAATTCTCCTAAGCTGTATAAGCCTCTTGGTGAAAATGCAATGAACAGAAATGAACTAACCATGCATAGGCAAGATCATGGAGTGGACACTTTTGAGAATCGAGGTCGACACGTTTCTTCTGCCACTGATCAAAGTGCATCTAGCGGTTTCTGTAATGGTGCTATCAGCCATCTGAATAGCGTTGCATATGGAAGCAACTGTGGAAACGATAGTACTGCTAATCAGTCCCCTGCTGTCATAAATTATGAAAGCAAAACTGACGACTTGACGAAATGTGGATTTTCTAATAGATCTGTTCAAAGAGAAGCAGCTCTAACAAAGTTCCGCTTGAAAAGGAAAGAGAGGTGCTATGAAAAGAAGGTTCGCTATGAAAGCAGAAAAAAACTTGCAGAGCAACGCCCCAGAGTTAAAGGACAATTTGTTCGTCAGGTGCAGCCTGATCTCTATCCTACTACAGAGAAGAATGGTAGTTCTCATGATGGCTAG 2070 0.4343 MGEVAVTRNDLGVKRLEREAENTEEECAVVKQGEDSSGLVIMWEKLLKRRMLRVLLVEADDSTRQVIAALLRKCSYKVAAVSDGLKAWEVLKGRPHNIDLILTEVDLPAISGFALLTLIMEHEICKNIPVIMMSSHDSISTVYNCMLRGAADYLVKPIRKNELSNLWQHVWRKQTSMDVSNGPQDESVAQQKVEGTCENNTASNHSSGDLACIQRNKELIEKGSDAQSSCTKPDLEAKSTPAEDLEEHAQSKYNKAYLSVKKVQENEPSINLGRKGSSHDSHTIGLSLGISNNGDTAATLGRDSDSVYPKARTSNLSEACDNNNALVNSSREATDFTFHTYPTCEPKNSPSISETRKIAPSSELKLSLRRSESHSFENEDIEEKNTLVHSNASAFKRYNSRQMQTSPRAGKHQIGSGTESEKNTSYMFTGYNSETSAPSLQRSFSPANVHPKESDIATSQLQHRVFPIAVPVEGIRYNDMSQAFGSVLPPVFYTQSGGPLPMPSSVAVAHAEPSFAADIFHHSNIEDHNSPKLYKPLGENAMNRNELTMHRQDHGVDTFENRGRHVSSATDQSASSGFCNGAISHLNSVAYGSNCGNDSTANQSPAVINYESKTDDLTKCGFSNRSVQREAALTKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVQPDLYPTTEKNGSSHDG* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01013 689 MobiDBLite consensus disorder prediction 367 386 - -
Pte16g01013 689 Gene3D - 52 268 - -
Pte16g01013 689 CDD psREC_PRR 54 157 - -
Pte16g01013 689 Pfam Response regulator receiver domain 54 165 IPR001789 GO:0000160
Pte16g01013 689 MobiDBLite consensus disorder prediction 387 432 - -
Pte16g01013 689 Coils Coil 6 33 - -
Pte16g01013 689 MobiDBLite consensus disorder prediction 655 689 - -
Pte16g01013 689 MobiDBLite consensus disorder prediction 346 432 - -
Pte16g01013 689 SUPERFAMILY CheY-like 50 175 IPR011006 -
Pte16g01013 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR 52 333 IPR045279 GO:0009736
Pte16g01013 689 SMART REC_2 52 167 IPR001789 GO:0000160
Pte16g01013 689 MobiDBLite consensus disorder prediction 223 249 - -
Pte16g01013 689 Pfam CCT motif 629 671 IPR010402 GO:0005515
Pte16g01013 689 ProSiteProfiles Response regulatory domain profile. 53 171 IPR001789 GO:0000160
Pte16g01013 689 MobiDBLite consensus disorder prediction 346 360 - -
Pte16g01013 689 ProSiteProfiles CCT domain profile. 629 671 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01013 Pte-Chr16 29567600 29572189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01013 363 673 Response Regulator Gene Family AT5G24470 34.056 3.38e-27 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Pte16g01013 Response_reg 6.1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01013 K12130 - qsa:O6P43_020012 693.73