Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01007 ATGGATTCTTTTGCAGAAGAAATAGACATGAGTTTAATGGAGGCAAAGCAATCGGCAATAGAGTTGGCGACTTTGGCAGTCTTCCCTTTGGTGCTCAAATCAGTGATTGAACTTGATGTATTGGAGATCATAGCCAAGGCTGGCCCCGCCGCCTATCTCTCCCCATCTGAGATTGCAGCTCAGCTCCCCACACAGAATCCAGATGCGCCAGCCACACTCAACCGCATGCTCCGTCTCTTAGCTGCTCACTCTGTTCTCACATACTCTACTCGTCACCGCCCCAATGGAAAGGTGGAGTTGCTCTACGGTCTAACTCCAGCCTGCAAGTTCCTGACCAAAAATAAGGACGGTATTTCTTTTGTGCCCCAGATACTTTGTGGTCTGGGCAAAGTCTACATGGAGAGCTGGAACTGCATGAAAGACGCTGTTCTTGAAGGTGGCATTCCGTTCAACAGGGCCTATGGGATGAGCGTATTTGAGTATCACGGTAAAGATTCCAAGTTGAGCCATTTATTCAACGAGGCCATGACTGGTACGAGTACCATGTTCATGAGTGAAGTTTTGAAGCTTTACAAGGGTTTCGAGGGCATTCATTCCCTTGTTGATGTCGGTGGTGGGACTGGGGCTGTCATTCACATGATTACGTCCAAGTATCCCTCCATAACTGGCATTAATTTTGACTTGCCGTTTGTCATTGCAGATGCACCAGATTATCCTGGTGTAGAACATGTAGGTGGGGATATGTTTGTCAGCGTACCAAGAGCAGAAGCAATTTTCTTGAAGTTCGTACTTCATGATTGGGGTGATGAATATTGTGCAAAACTTTTGAAAAATTGCTACGATGCACTGCCAAATGGGGGAAAGGTGATTGTTGCTGAACACATTGTTCCGGAAACTCCGGAACCTCAGGCTTTGACTCAGGCTACCCTCCGGTATGATCTGGCTATGATGGCAGTGACTTCAAATGGCAAAGAGAGAACTGAGAAAGAGTTTCAGGCTTTGGCTGAAGGAGCTGGTTTCCAACAATTTCAAGTCACCTTTTGCTCTTACCAATACTATTCCACATATTGCAGTATCAGGCTTCTGCTAGCTAACTCACTGTCTCAGACTGCTATACACGTATTTAGACTCATTATGGATTCTTTTGCACAAGAAGTGGATACGAGTTTAATGGAGGCAAAGCAATCGGCAATAGAGTTGGTGACTTTGGCAGTCTTCCCTATGGTGCTCAAATCAGTGATTGAACTTGATGTCTTGGAGATCATAGCCAACGCTGGCCCCGGCGCCTATCTCTCACCATCTGAGATTGCAGCTCAGCTCCCCACACAGAATCCAGATGCACCAGCCACACTGAACCGCATGCTCCGTCTCTTAGCTGCTCACTCTGTTCTCACATACTCTACTCGTCACCTCCCCAATGGAAAGGTGGAGTTGCTCTACGGTCTAACCCCCGCTTGCAAGTTCCTGACCAAAAATAAGGAGGGTATTTCTTTTGTGCCCCAGATACTATGTGGTCTGGGCAAAGTCTACATGGAGAGCTGGTTGGAGCCTCCCACCCAGAATCTCAAATCATATTATCCCGCATTCCCTGTCCCTAAATCCCGAATTACGTAG 1614 0.4715 MDSFAEEIDMSLMEAKQSAIELATLAVFPLVLKSVIELDVLEIIAKAGPAAYLSPSEIAAQLPTQNPDAPATLNRMLRLLAAHSVLTYSTRHRPNGKVELLYGLTPACKFLTKNKDGISFVPQILCGLGKVYMESWNCMKDAVLEGGIPFNRAYGMSVFEYHGKDSKLSHLFNEAMTGTSTMFMSEVLKLYKGFEGIHSLVDVGGGTGAVIHMITSKYPSITGINFDLPFVIADAPDYPGVEHVGGDMFVSVPRAEAIFLKFVLHDWGDEYCAKLLKNCYDALPNGGKVIVAEHIVPETPEPQALTQATLRYDLAMMAVTSNGKERTEKEFQALAEGAGFQQFQVTFCSYQYYSTYCSIRLLLANSLSQTAIHVFRLIMDSFAQEVDTSLMEAKQSAIELVTLAVFPMVLKSVIELDVLEIIANAGPGAYLSPSEIAAQLPTQNPDAPATLNRMLRLLAAHSVLTYSTRHLPNGKVELLYGLTPACKFLTKNKEGISFVPQILCGLGKVYMESWLEPPTQNLKSYYPAFPVPKSRIT* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01007 537 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 398 537 IPR016461 GO:0008168
Pte16g01007 537 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 352 IPR029063 -
Pte16g01007 537 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 363 IPR016461 GO:0008168
Pte16g01007 537 PANTHER O-METHYLTRANSFERASE 400 517 IPR016461 GO:0008168
Pte16g01007 537 CDD AdoMet_MTases 200 291 - -
Pte16g01007 537 Gene3D Vaccinia Virus protein VP39 112 355 IPR029063 -
Pte16g01007 537 FunFam Caffeic acid 3-O-methyltransferase 3 111 - -
Pte16g01007 537 FunFam Caffeic acid O-methyltransferase 112 357 - -
Pte16g01007 537 Gene3D - 5 111 IPR036388 -
Pte16g01007 537 FunFam Caffeic acid 3-O-methyltransferase 379 489 - -
Pte16g01007 537 SUPERFAMILY "Winged helix" DNA-binding domain 11 114 IPR036390 -
Pte16g01007 537 SUPERFAMILY "Winged helix" DNA-binding domain 389 492 IPR036390 -
Pte16g01007 537 Pfam Dimerisation domain 31 81 IPR012967 GO:0046983
Pte16g01007 537 Pfam Dimerisation domain 408 459 IPR012967 GO:0046983
Pte16g01007 537 Gene3D - 404 520 IPR036388 -
Pte16g01007 537 Pfam O-methyltransferase domain 136 341 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01007 Pte-Chr16 29442142 29477617 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01007 392 514 Monolignol Biosynthesis Gene Families AT5G54160 52.033 1.75e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01007 K13066 - atri:130825453 487.263