Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01006 ATGGAGGCATCTGCAGAAAACGAGAAAGGTCTAATAGAGGCAATGCAATTGGCAATTGCAACAGCTTTTCCAATGGTGCTCAAGTCAGTGATTGAACTTGATGTCTTGGAAATCATAGCCAAGGCTGGCCCTGACGCCTACCTCTCACCAACTGAGATTGCAGCTCAGCTCCCCACACAGAACCTTGATGCACCACTCATGCTCGACCGTATGCTTCGTCTCTTAGCTAGTCACTCTGTCCTCAAATTCTCTAAGCGCGAACTCCATGATGGGAAGGTAGAGTTGCTCTACGGTCTAACGCCTGTCGCTAAATGCTTCACTAAAAATGAGGGTGGTGTTTCAATGGCTCCTCTGCTTTTGATGCTCCAGGATAAGATCTACATGGAGAGCTGGTACTACTTGAAAGATGCGGTTCTTGAAGGTGGAATTCCTTTTAACAAGGCTTATGGTATGAACGCTTTTGACTATCATGGCAAGGACCCCAGGTTCAGCCATCTCTTCAACAAGGCCATGTCTGATCCTTCTACAATTGTCACGAGTGAATTTTTGAAGACTTACAAGGGTTTTGAAGGCCTGACTTCCTTGGTTGATGTGGGCGGTGGAACTGGGGCTGTGATTCACTTGATTACATCCAAGTATCCTAACATCAGAGGCATTAATTTTGACTTGCCTTTTGTAATTGCAGAGGCACCAGCTTATCCTGGTGTGGAACATGCAGGTGGGGATATGTTTGTCAGCGTACCCAAAGCAGATGCAATATTTATGAAGTTCATACTTCATGATTGGGGCGATGATTACTGTGAGAAACTTTTGAAAAATTGCTATGATGCGCTACCAAGCGAAGGGAAGGTGATTGTAGCTGAAAGCATTCTTCCAGAAACCCCAGAACCAGGGGGCGTCAGTCAGCGTGTGTTAAGCAGTGATGTCATCATGATGGCAGTGAATCCAAATGGTAAAGAGAGAACTGAGAAAGAGTTTGAGGCTTTGGCCAAGCAAGCTGGATTTCAAGAATTTCGACTCACCTCCTGTTCTTTTCATCACTTGCACCTAATTGAATTTCTAAAAAAGGCTTGA 1074 0.4507 MEASAENEKGLIEAMQLAIATAFPMVLKSVIELDVLEIIAKAGPDAYLSPTEIAAQLPTQNLDAPLMLDRMLRLLASHSVLKFSKRELHDGKVELLYGLTPVAKCFTKNEGGVSMAPLLLMLQDKIYMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDPRFSHLFNKAMSDPSTIVTSEFLKTYKGFEGLTSLVDVGGGTGAVIHLITSKYPNIRGINFDLPFVIAEAPAYPGVEHAGGDMFVSVPKADAIFMKFILHDWGDDYCEKLLKNCYDALPSEGKVIVAESILPETPEPGGVSQRVLSSDVIMMAVNPNGKERTEKEFEALAKQAGFQEFRLTSCSFHHLHLIEFLKKA* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01006 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 353 IPR029063 -
Pte16g01006 357 PIRSF O-mtase 1 355 IPR016461 GO:0008168
Pte16g01006 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 15 355 IPR016461 GO:0008168
Pte16g01006 357 Gene3D - 1 105 IPR036388 -
Pte16g01006 357 Gene3D Vaccinia Virus protein VP39 107 355 IPR029063 -
Pte16g01006 357 FunFam Caffeic acid O-methyltransferase 107 355 - -
Pte16g01006 357 FunFam Caffeic acid 3-O-methyltransferase 1 106 - -
Pte16g01006 357 SUPERFAMILY "Winged helix" DNA-binding domain 6 110 IPR036390 -
Pte16g01006 357 Pfam O-methyltransferase domain 131 336 IPR001077 GO:0008171
Pte16g01006 357 PANTHER O-METHYLTRANSFERASE 14 338 IPR016461 GO:0008168
Pte16g01006 357 Pfam Dimerisation domain 25 76 IPR012967 GO:0046983
Pte16g01006 357 CDD AdoMet_MTases 195 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01006 Pte-Chr16 29423131 29424893 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01006 14 356 Monolignol Biosynthesis Gene Families AT5G54160 63.848 9.81e-162 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01006 K13066 - jre:109007527 481.87