Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00996 ATGGCTGTGGTGTCTCTGAGTTCATTACCTTTAGGGTTCAGGTTTCGGCCCACGGATGAGGAGCTCATCGATTACTACCTACGATTCAAGATCAATGGCAACAACGATGAAGTCAGGGTCATACGTGAAATTGATGTCTGTAAATGGGAGCCTTGGGATCTGCCTGATTTATCAGTCATACAGACGAAGGATCCAGAGTGGTTCTTCTTCTGCCCTCAGGACCGGAAGTATCCTAATGGCCATCGGTTGAACCGGGCAACAACTCAAGGATATTGGAAGGCTACTGGTAAAGATCGAAAGATTAAGTCTGGTTCAACCTTGATTGGAATGAAGAAAACTCTGGTCTTCTATACTGGACGTGCACCAAAGGGGAAGAGAACTAATTGGGTTATGCATGAATATCGTCCTACTCTCAAGGAGCTTGATGGCACCAATCCTGGGCAGAACCCCTATGTCCTCTGTCGATTGTTCAAGAAGCAAGATGAGAGTCTAGAATCTCCAAATTGTGAGGATGCTGAACTTGCCGTTTCATCGCCAACAGCTAGATCTTCTCAAGAAGATTTGCATTCTGATCTAGCTGCTGCTGGAGTATCTCCTTCACTGGGCACGGTAGATCAAAAGCAGGTAGGGCATTCCTGTAATGCTGAATTTTCGGAAGAAACAACATCCAATGCTATTGCTAAGCCGACAACTCCAGAGGTAGATCAGCTGTTAGACCAGCTGTTAGACGAGGACTTGAGAATTTTCGACGACCCAATGCCAGAACAATTAGATGGAACAATTTTCTCTCCTGTCCATTTACAAATGAAGTCTTGTATGTATTACCCGGCAAATAATTATTCTGACAATCATTATGGGTTGCAACTAGAGTATGGTACAAACGAGCCGGACATGTCAGATTTCTTAAATTCAGTTATTAATTCGGAGGAATACTCCTGTGAGGAATCCAGTTGTCAACAGCCTTTGGGTTTTGAAAATGGGGAGCCAAATAGCTTCATTTCTGTAAAAGATAATGCATCAGGGAGTGAGTCTGATGTTGATATGGCTAGTACACTGTTTCCCACAGACTTCCAAAGTCCCTTGTGGGCGGAAGAGGATGCTGACAGAAAGGTTCCTATTGTCCCGGAGACAACACCAGTTGTTTTCAACAATTTTGACTATGGCCAGAATCAGGAAAAGTACATTACAAATCTGAGAATGTTGTCGGATGGATCCAGATGGTTTAATTCAGCACCTGATGTAGGTTTAGACCAAGTCAACGGTTGTGGCAATAGTCACAAAGAATCGAGAGATTGGGCTAGCACAGCCGAGAACAATGAGAATGGTACTGGAATTAAGCTAAGGGCTCGGCAAGGGCTAAACCGACAACCTAATGTGAACCATGCTGCACAGGGCACTGCATCTAGGAGAATTAGACTGCAGCAGAAATTTCAAGCTTACTCAGAGCAGAGCAACAGAGAAGAAAATGTGGTACTAAAGACATTGGACAATGAGGAGGAAGTGGTTTCTGGAGAGCATGATTCAGATAATGGTGTCAATGATGTTAACTGTTCATCTGAACCCCACAAAACATGTGAATCTCTTCGTAGCAGAAGTGTTTCTGAACAAAATGATCCTATTGTGACTTCTAGCCCAGGGTCAAAGATTTTGATGCGGAAGAAGTTACTTTACAAGATAAATTCAAAATCTGGTTATACTCATCGCTCTACCTGGTTGTACATTGTCATGTTCATTCTCATTGCATTGGTGGTAATAGTCATTGCTAACATGACGAGTCTATTCAAGGCCGAGCCGCTTCGAGATCATGTCTTATAG 1815 0.4336 MAVVSLSSLPLGFRFRPTDEELIDYYLRFKINGNNDEVRVIREIDVCKWEPWDLPDLSVIQTKDPEWFFFCPQDRKYPNGHRLNRATTQGYWKATGKDRKIKSGSTLIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKQDESLESPNCEDAELAVSSPTARSSQEDLHSDLAAAGVSPSLGTVDQKQVGHSCNAEFSEETTSNAIAKPTTPEVDQLLDQLLDEDLRIFDDPMPEQLDGTIFSPVHLQMKSCMYYPANNYSDNHYGLQLEYGTNEPDMSDFLNSVINSEEYSCEESSCQQPLGFENGEPNSFISVKDNASGSESDVDMASTLFPTDFQSPLWAEEDADRKVPIVPETTPVVFNNFDYGQNQEKYITNLRMLSDGSRWFNSAPDVGLDQVNGCGNSHKESRDWASTAENNENGTGIKLRARQGLNRQPNVNHAAQGTASRRIRLQQKFQAYSEQSNREENVVLKTLDNEEEVVSGEHDSDNGVNDVNCSSEPHKTCESLRSRSVSEQNDPIVTSSPGSKILMRKKLLYKINSKSGYTHRSTWLYIVMFILIALVVIVIANMTSLFKAEPLRDHVL* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00996 604 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Pte16g00996 604 Pfam No apical meristem (NAM) protein 10 135 IPR003441 GO:0003677|GO:0006355
Pte16g00996 604 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 223 - -
Pte16g00996 604 MobiDBLite consensus disorder prediction 509 523 - -
Pte16g00996 604 MobiDBLite consensus disorder prediction 501 531 - -
Pte16g00996 604 FunFam Nac domain-containing protein 86 18 162 - -
Pte16g00996 604 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Pte16g00996 604 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00996 Pte-Chr16 29379556 29383125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00996 1 488 NAC Transcription Factor Family AT4G35580 44.242 5.64e-109 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte16g00996 NAM 5.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00996 - - qsa:O6P43_020031 513.457