Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00991 ATGAAGACTATACTGTCATCGGAGACAATGGACATTCCCGATGGAATCACTGTCAAGGTGAACGCTAAGTTGATCGAGGTTGAAGGTCCACGAGGCAAGCTGGTACGCAACTTCAAGCACCTTAACCTTGACTTTGATCTTATCACTGATGAGGAAACTGGCAAGAGGAAGCTCAAAATTGATGCTTGGTTTGGGTCTCGCAAGGCTTCTGCTGCTATTCGAACTGCTCTTAGTCACGTTGAGAATCTCATCACCGGTGTCACCAAGGGATATCGCTATAAAATGAGGTTTGTTTACGCTCACTTCCCAATTAATGCTAGCATCACCAACGGAAGCAAGTCCATTGAGATCAGGAACTTTCTTGGTGAGAAAAAGGTGAGAAAAGTGGACATGCTTGATGGGGTGGCTATCACTCGATCTGAAAAGGTTAAGGACGAGTTGATAGTAGATGGAAATGACATAGAGCTCGTTTCTCGATCCTGTGCTCTCATTAACCAGAAATGCCACGTGAAGAACAAAGATATTCGGAAGTTCTTGGATGGTATCTATGTTAGTGAAAAGGGAACAATAGTTCAAGAGGAATAG 585 0.4376 MKTILSSETMDIPDGITVKVNAKLIEVEGPRGKLVRNFKHLNLDFDLITDEETGKRKLKIDAWFGSRKASAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNFLGEKKVRKVDMLDGVAITRSEKVKDELIVDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTIVQEE* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00991 194 SUPERFAMILY Ribosomal protein L6 91 187 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte16g00991 194 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 190 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte16g00991 194 Gene3D - 91 194 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte16g00991 194 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 193 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte16g00991 194 Pfam Ribosomal protein L6 107 181 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte16g00991 194 Pfam Ribosomal protein L6 12 90 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte16g00991 194 SUPERFAMILY Ribosomal protein L6 1 90 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte16g00991 194 FunFam 60S ribosomal protein L9 1 90 - -
Pte16g00991 194 FunFam 60S ribosomal protein L9 91 194 - -
Pte16g00991 194 Gene3D - 1 90 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte16g00991 194 ProSitePatterns Ribosomal protein L6 signature 2. 166 187 IPR002359 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00991 Pte-Chr16 29340664 29343157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00991 1 195 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 83.590 1.96e-121 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00991 K02940 - qsu:112024691 361.303