Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00983 ATGGACATTAACCATTCATCAAAATCTCCCACACTTTCAGGTGTGCTCCAAAATGAAGTCGCTTGGTTCGATAAACCTGAAAACAATGTTGGTTCACTGACTTCACGAATCATCAGTGATACATCAATGATCAAAGTCATAATTGCTGACCGTATGTCTGTGATCGTCCAATGCGTTTCCTCCATAATGATAGCAACAATTGTGAGCATGGTTGTCAATTGGAGAATGGCTCTGGTGGCTTGGGCAGTGATGCCCTGTCACTTCATAGGGGGCCTGATTCAGGCCAAGTCTGCCAAAGGATTCTCAGGAGATCACTCTGCATTTCATCACGAAGTGGTTGAACTAGCTTCTGAGTCCACAGCCAACATTAGGACAATAGCATCATTTTGCCATGAAGAGCATGTCATCAGCAAAGCAAGAATAGCTCTGGAAACTCCAAAAAGGAAAAGCAGAATAGAAAGTGTCAAGTATGGAATTATTCAAGGCTTTTCACTTCTATTATGGAACATCGCACATGCTGTTGCCCTGTGGTACACAACAATATTGGTCGAAAGACATCAGGCGAAATTTGAAAATGGCATTAGAGCATACCAGATTTTCTCTCTCACAGTTCCTTCCATAACTGAATTATGGACACTGATTCCCACTGTCATATCTGCAATCAATATACTAACTCCATCGTTTCAAACCCTTGACCGAAAAACTGAAATTGAACCAGATGTACCAAGCGGTTCGGATGCTGAAGTTATCACAGGGAAAGTCGAATTTCAGAATGTAAAGTTTAACTATCCTTCAAGGCAAGAAGTCACCGTTCTTGATAGTTTTAGTTTACAAATTGAAGCTGGATTAAAGGTGGCTCTAGTTGGGCCAAGCGGAGCCGGGAAGTCCTCTGTTTTGGCCCTTCTATTGAGATTCTATGACCCTATGGAAGGAAAGATATTCATCGATGGGAAAGACATCAAAGAATATAACTTGAGAAGGTTAAGAGCCCAAATAGGTTTTGTGCAACAAGAACCACTTCTTTTTAGTTCCTCAATTAGAGAAAATATATGCTATGGCAACAACGAAGCTACAGAAAGTGAGATTGTGGAAGTTTCAAAAGATGCAAACATACATGAGTTTATCAGTAGCCTGCCAGATGGATATGACACAGTGGTAGGGGAGAAGGGCTGCCAGCTTTCAGGAGGACAAAAACAAAGAATAGCGATTGCCAGATCCTTGTTGAAGAAGCCTGCAATTTTACTTTTAGATGAAGCTACAAGTGCTCTTGATGCAGAGTCTGAAAGAATAATTGTCAGTGCCTTGGAGTCCTTATACCTGAAGGAAAAAAGTGGTTTATATTCGAAAATCACTCAGATTACTGTTGCACATAGATTGTCAACAGTTATAAATTCAGACACCATAGTTGTCATGGACAAAGGCAAGATTGTGGAGATGGGAACTCACTCAACACTCACTGTAGCAGCCGAAGGGGGGGTTTATTCAAGATTATACAGTCTACAGAGCTTTGGAAAAAGTTGA 1521 0.4103 MDINHSSKSPTLSGVLQNEVAWFDKPENNVGSLTSRIISDTSMIKVIIADRMSVIVQCVSSIMIATIVSMVVNWRMALVAWAVMPCHFIGGLIQAKSAKGFSGDHSAFHHEVVELASESTANIRTIASFCHEEHVISKARIALETPKRKSRIESVKYGIIQGFSLLLWNIAHAVALWYTTILVERHQAKFENGIRAYQIFSLTVPSITELWTLIPTVISAINILTPSFQTLDRKTEIEPDVPSGSDAEVITGKVEFQNVKFNYPSRQEVTVLDSFSLQIEAGLKVALVGPSGAGKSSVLALLLRFYDPMEGKIFIDGKDIKEYNLRRLRAQIGFVQQEPLLFSSSIRENICYGNNEATESEIVEVSKDANIHEFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARSLLKKPAILLLDEATSALDAESERIIVSALESLYLKEKSGLYSKITQITVAHRLSTVINSDTIVVMDKGKIVEMGTHSTLTVAAEGGVYSRLYSLQSFGKS* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00983 506 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 15 219 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte16g00983 506 FunFam ABC multidrug transporter mdr4 252 503 - -
Pte16g00983 506 Pfam ABC transporter 272 421 IPR003439 GO:0005524
Pte16g00983 506 Pfam ABC transporter transmembrane region 11 192 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte16g00983 506 Gene3D ABC transporter type 1, transmembrane domain 6 241 IPR036640 GO:0005524|GO:0016020
Pte16g00983 506 CDD ABC_MTABC3_MDL1_MDL2 254 501 - -
Pte16g00983 506 Gene3D - 244 504 IPR027417 -
Pte16g00983 506 SMART AAA_5 281 475 IPR003593 GO:0016887
Pte16g00983 506 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 254 498 IPR003439 GO:0005524
Pte16g00983 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 501 IPR027417 -
Pte16g00983 506 SUPERFAMILY ABC transporter transmembrane region 14 239 IPR036640 GO:0005524|GO:0016020
Pte16g00983 506 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 11 497 IPR039421 -
Pte16g00983 506 ProSitePatterns ABC transporters family signature. 393 407 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00983 Pte-Chr16 29293012 29294532 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00983 8 503 Calmodulin-binding Proteins AT2G36910 44.112 1.24e-129 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00983 K05658 - qsa:O6P43_014878 799.66