Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00968 ATGGAGACTTCGGGCGCAAATTCTGATACCCATAACACTAATTCTTCATCTGTATCTGCCGGCGGTGTAAATAGTAGGAGTGATAATGATGGCGATAATACAACTAACACGTGGTATGACATGCAAATCCCAGGTTCTCTAAACCCTTTTAGATCACCGATTTCTTTTTTGTTAGACTATTCGGGGATTCTTAGGTCGACTTCGGCGCATGATTCTGATGCTGCTGCTTTAGATAATGGAGTAGGAAATCCTGAATTTCGACCTGAGCTTCGCGATCATACCCGGGACTGTGCTTCGGCAATTTCTTTCAGCGGTAGTGAAGGTTTGAGTAGTAGTACTGGGGAGGTTTCAATTCAGATTATTGGTAATGGGGAGCAATATAATGGTGTTGGGTCAGGGACAGTTTCTCTGTCATCACAGAATGAGGTTCAAGTTGGTTCTGAAGAGAGTGGTGGTTTGATGGGGAGTAGAGGTGGGATCTCACCGTTGCATAGTGAGGGTGGTAGCATTGGAGTTGTTGGAGGAGAAAGGGTGCCACTAGTGGCATCATCATCTTCTTTGTCAGATGGGAATGGTGCTAATGAATTGAATCGAAACACTGGTGATTCGTCATCTTATCAAAGATATGATATCCAACAGATTGCGAGGTGGATAGAACAGATTCTTCCTTTCTCATTGTTGTTGCTGGTGGTTTTCATTCGACAGCATTTGCAAGGTTTCTTTGTTACAATTTGGATTTCAGCCATCATGTTCAAATCGAATGATATTGTGCGGAAGCAGACAGCTCTAAAGGGAGATAGAAGAACCTTGTCTCTTGTGGGCATTTCAATGTTGTTCATTCTTCATGTTATCTCCATTTATTGGTGGTACCAAAATGATGACATTCTATATCCATTGATCATGATTCCTCCGAAGACTGTGCCTCCATTCTGGCATACTATATTCATCGTTTTAGTAAATGATACGATGATGAGACAGGCTGCAATGGCTTTCAAATGTTTAATCCTTATATACTATAAGAACGGTAGAGGGCACAACTTCCGTCGTCAGGGTCAAATGTTAACCCTAGTTGAGTATGCTTTTCTTCTGTATCGTGCCTTGCTACCAACACCAGTGTGGTACCGTTTTTTCTTAAACAAGGATTATGGAAGCCTCTTCTCATCACTGACTACAGGGTTGTATCTAACTTTCAAGCTAACATCTGTCGTTGAGAAGGTCCAATATTTCTTTTCTGCCTTGAAAGCATTGTCTCGGAAGGAAGTACATTATGGGGTTTATGCCACACTGGAACAGGTTAATGCAGCAGGTGATCTGTGTGCCATTTGTCAGGAGCAGATGCACGCTCCTATCATTTTGCGCTGTAAACATATCTTCTGTGAGGAGTGTGTCTCTGAATGGTTCGAGAGAGAACGGACTTGCCCACTCTGCAGGGCATTGGTGAAACCAGCAGAAATGAGAACCTTTGGGGATGGATCCACAAGTCTCCTGTTTCAGTTATTCTGA 1503 0.4285 METSGANSDTHNTNSSSVSAGGVNSRSDNDGDNTTNTWYDMQIPGSLNPFRSPISFLLDYSGILRSTSAHDSDAAALDNGVGNPEFRPELRDHTRDCASAISFSGSEGLSSSTGEVSIQIIGNGEQYNGVGSGTVSLSSQNEVQVGSEESGGLMGSRGGISPLHSEGGSIGVVGGERVPLVASSSSLSDGNGANELNRNTGDSSSYQRYDIQQIARWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAIMFKSNDIVRKQTALKGDRRTLSLVGISMLFILHVISIYWWYQNDDILYPLIMIPPKTVPPFWHTIFIVLVNDTMMRQAAMAFKCLILIYYKNGRGHNFRRQGQMLTLVEYAFLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQYFFSALKALSRKEVHYGVYATLEQVNAAGDLCAICQEQMHAPIILRCKHIFCEECVSEWFERERTCPLCRALVKPAEMRTFGDGSTSLLFQLF* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00968 500 SMART ring_2 439 476 IPR001841 -
Pte16g00968 500 MobiDBLite consensus disorder prediction 1 37 - -
Pte16g00968 500 Pfam Zinc finger, C3HC4 type (RING finger) 437 480 - -
Pte16g00968 500 CDD RING-HC_RNFT1-like 437 477 - -
Pte16g00968 500 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 19 500 IPR044235 GO:0061630|GO:1904294
Pte16g00968 500 SUPERFAMILY RING/U-box 430 482 - -
Pte16g00968 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 487 IPR013083 -
Pte16g00968 500 ProSitePatterns Zinc finger RING-type signature. 454 463 IPR017907 -
Pte16g00968 500 ProSiteProfiles Zinc finger RING-type profile. 439 477 IPR001841 -
Pte16g00968 500 MobiDBLite consensus disorder prediction 183 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00968 Pte-Chr16 29181051 29184819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00968 48 501 C3H Transcription Factor Family AT5G01960 60.088 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00968 - K22379 qsa:O6P43_020068 692.96