Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00962 ATGGAGAGCGAGTTGTTGGAGCTGTTTAATTCGGTGAAGAAAGCGGCGGATGAGGCTAGTTCGTCTGACGGTGTAGCCGAGGAGAAGCGTTGTCTTGATGCCCTTGAAGAACTCAAGAAATTTCCTGTTAACTATCAAATCCTCGTCTCCACCCAGGTGGGAAAGAGTCTTCGACATCTCACAAAGCACCCAAGGAAGAAAATTCAATCATTTTCATCTGATCTGATTGAGATATGGAAGAGGATCATCTTTGAGGAAACAAGCAAAACTAAATCTGGGAACTCTGATAGTAAAGTGCAGTCTCCAAATGCTGAAAAAGTTCGGAAGACACCTCCAGTGAAGGTCGAAAATACTACAAAGGCTGGAACAGTGAAGGTTGAGAAGATTGAAAGGAATGGTACATCAAGCTCAGAAAAAGTGAGAAAGGTGCAAAATATGGATGTCAAAACCCAACAAAATGGGTACAGGGAGAATGTTAAGGTAGAAAATATAATAAAAGCTGAGAAGACATTTCAGGAGACTGTGCAGGTACAAAGGGTAATGAAAGATGAAAGAAATGTTGGCCGCTCTGGTCCACCAAAATTGACATCCATGCCCAGAACTCTTGACTCATTGAGAGATAAGGTACGGGATATCATTCATGAGGCATTGGCCAGAGTTTCTGGAGAGGCCGATGAAGAGATGAGAGATCAAGTCAATGCATCTGACCCTATTCGGGTCACTGTTAATGTAGAATCCGCATTATTTAATAGGTGGGGTCACAATAACGGGGCACACAAAATGAAGTATAGGTCTTTATTGTTTAACCTTAAGGACGGTAAAAATCCTGATTTTCGGAGGAAAGTTTTACTTGGACAAGTACAGCCTGAGAGGTTGCTTCTCATGAGCACTGCAGAGATGGCAAGCGAACAGAGGAAGCGTGAGAATGAGCAAATCAAAGAAAAGTTTATGTTTGATTGTGAACGTGGCCTGCAGCCGAAAGAAACAACTGATCAGTTCAAATGTGGGCGTTGTGGTCAAAGGAAGACAACCTACTACCAAATGCAGACACGCAGTGCTGACGAACCCATGACTACATATGTTACATGCGTAAATTGCAACAACCATTGGAAGTTCTGTTAG 1122 0.4269 MESELLELFNSVKKAADEASSSDGVAEEKRCLDALEELKKFPVNYQILVSTQVGKSLRHLTKHPRKKIQSFSSDLIEIWKRIIFEETSKTKSGNSDSKVQSPNAEKVRKTPPVKVENTTKAGTVKVEKIERNGTSSSEKVRKVQNMDVKTQQNGYRENVKVENIIKAEKTFQETVQVQRVMKDERNVGRSGPPKLTSMPRTLDSLRDKVRDIIHEALARVSGEADEEMRDQVNASDPIRVTVNVESALFNRWGHNNGAHKMKYRSLLFNLKDGKNPDFRRKVLLGQVQPERLLLMSTAEMASEQRKRENEQIKEKFMFDCERGLQPKETTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVNCNNHWKFC* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00962 373 ProSiteProfiles TFIIS central domain profile. 205 328 IPR003618 GO:0006351
Pte16g00962 373 ProSiteProfiles TFIIS N-terminal domain profile. 7 86 IPR017923 -
Pte16g00962 373 SUPERFAMILY Elongation factor TFIIS domain 2 192 303 IPR036575 GO:0006351
Pte16g00962 373 ProSitePatterns Zinc finger TFIIS-type signature. 335 370 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pte16g00962 373 NCBIfam transcription elongation factor S-II 12 373 IPR006289 GO:0003676|GO:0005634|GO:0006368
Pte16g00962 373 MobiDBLite consensus disorder prediction 90 112 - -
Pte16g00962 373 ProSiteProfiles Zinc finger TFIIS-type profile. 331 371 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pte16g00962 373 SMART Cys4_2 333 372 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pte16g00962 373 CDD Zn-ribbon_TFIIS 326 372 - -
Pte16g00962 373 Pfam Transcription factor S-II (TFIIS) 333 371 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pte16g00962 373 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 3 98 IPR035441 -
Pte16g00962 373 SMART TFS2_5 8 85 IPR003617 GO:0005634
Pte16g00962 373 PIRSF TFIIS 2 373 IPR035100 -
Pte16g00962 373 SMART mid_6 207 311 IPR003618 GO:0006351
Pte16g00962 373 Pfam TFIIS helical bundle-like domain 34 83 IPR017923 -
Pte16g00962 373 CDD TFIIS_I 12 83 - -
Pte16g00962 373 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 99 IPR035441 -
Pte16g00962 373 Pfam Transcription factor S-II (TFIIS), central domain 202 318 IPR003618 GO:0006351
Pte16g00962 373 Gene3D - 302 373 - -
Pte16g00962 373 Gene3D - 181 301 IPR036575 GO:0006351
Pte16g00962 373 SUPERFAMILY Zinc beta-ribbon 312 371 - -
Pte16g00962 373 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 373 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pte16g00962 TFIIS_M 3.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00962 K03145 - qsa:O6P43_014856 498.434