Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00960 ATGCTAAAACCAGTAATGGATACTAGTTTCCTAGAAAACTTGTCTGCCGACAAAAAGAAAGTGATTGTAGGTGAGCTTCTTCGGGGTCATCGGAATGCCCTTCAGCTTAAAAATCTATTTCAAAAGCCTGAAAAATTTGATGGCTCCACATCAGAAGCTGAGGATCTGGTGGTGAAAATCGAAAGATCTTTGACTCATAGTATTTCTGTGCTGACTTCTGGTGAGCTTGATGGGGAGGTTTCTGAGAGTCTAGTCGTTTCTGGACATGATAATACTTCACAGCTGGTTGGTTCTTTGGATGATCTGAGGTCTGAAGACTCCGGAGAGAGTGGGAAGAGGTCACCGGCTACAAAGGAGAAGAGGGGTTGCTACCGAAGAAGGAAGAATGCACAAACATGGACATTTGTCAAACCAAGCATACAAGACAATCATGCATGGAGAAAATACGGCCAGAAGGAAATCCTTAACTCCAAATATCCAAGGAGTTACTTCAGATGCACACACAAGTTTGACCAAGGGTGTAAAGCAAGCAAACAAGTCCAAAGAATGGAAGAGAATCCTGAGAAGTACCATATTACATACATGGGTATTCACACATGCAAAGAAGTTTCGAAGACCCCACAAATGATTAGAGGATCTGTTCCCTGTAAATCATTCTTCATCAATCGTAAGGATTCAGAGATTCAAACCAAACCTGATGAGTATCCACAGCAATTCCTTAGCTCGTCATCACTACCAAACACACAACGTGAACATTTCAAGCAAGAGACACTCGCCAATGCCATTGATCTTGCAGACAATCTATCTTCATTGGAGACTTGCACTCTGTGGCCAAAGTCTAGTTTTGATGACTTGACCGAGACTGCTGCTGCAATGTTGTCGATGGATTCTGATAATGGTGATACGATGTACTCATGCACAGACAAGGGTTCTCATAGTTTTGGCATGGATAATAGTTTTGGCATGGATTTTACGGTTGATTCTGTCCCTTTCGATGGCAGCACTGACTTTCACTTCGATGAGAGTTATCGGTTCTTCGATTATTAA 1047 0.4222 MLKPVMDTSFLENLSADKKKVIVGELLRGHRNALQLKNLFQKPEKFDGSTSEAEDLVVKIERSLTHSISVLTSGELDGEVSESLVVSGHDNTSQLVGSLDDLRSEDSGESGKRSPATKEKRGCYRRRKNAQTWTFVKPSIQDNHAWRKYGQKEILNSKYPRSYFRCTHKFDQGCKASKQVQRMEENPEKYHITYMGIHTCKEVSKTPQMIRGSVPCKSFFINRKDSEIQTKPDEYPQQFLSSSSLPNTQREHFKQETLANAIDLADNLSSLETCTLWPKSSFDDLTETAAAMLSMDSDNGDTMYSCTDKGSHSFGMDNSFGMDFTVDSVPFDGSTDFHFDESYRFFDY* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00960 348 SMART WRKY_cls 140 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte16g00960 348 SUPERFAMILY WRKY DNA-binding domain 139 201 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte16g00960 348 ProSiteProfiles WRKY domain profile. 140 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte16g00960 348 MobiDBLite consensus disorder prediction 102 118 - -
Pte16g00960 348 Pfam WRKY DNA -binding domain 141 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte16g00960 348 MobiDBLite consensus disorder prediction 95 123 - -
Pte16g00960 348 Gene3D WRKY domain 125 202 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte16g00960 348 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 27 226 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00960 Pte-Chr16 29123166 29125586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00960 18 208 WRKY Transcription Factor Family AT3G56400 45.550 5.33e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pte16g00960 WRKY 3.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00960 - - qsa:O6P43_014855 258.455