Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00959 ATGCGAGCATTGTTGGGAATGATAGCTGTTTTCAGCTTGACTTTCTTTCTTGTTGTAGCACCGGTACTTGGGGCATCACTGAACCCATCTTTGAACGATGATGTGTTGGGATTGATTGTATTTAAAGCTGATGTACGAGATCCAAAAGGAAAGCTGGAGTCTTGGAATGAAGATGCTGAAAGCGCTTGTGGTTGGGCTGGTGTGAGATGTAACCCCAGATCCAACAGAGTCACTGAGCTCAACCTTGACGATTTCTCTCTTTCCGGTAAGATAGGCAGAGGCCTACTGCAATTGCAATTTCTGAGGAAGCTTTCTCTTTCAAAGAATAATCTTACTGGAAGTATAAGTTCTAATATAGCTCGGATAGAGAACCTTAGAGAGATTGATTTGAGTGAGAACAATCTTTCGGGAGAGGTACCTGATGATTTCTTTCGACAATGTGGATCTCTTAGGGGAATAACTTTGGCCAAAAACAAGTTTTCCGGGGAGATTCCAGCGAGTTTAACCTCATGTTCATCTCTTGCCACAATCGATTTTTCCTTCAACCAATTTTCGGGTTCAATTCCACCTGGAATTTGGTCTTTGAGTGGACTTAGGTCGTTGGATTTGTCTCATAATTTGCTTAAAGGTGAGGTTCCGAAGGGAATTGAAGAGTCGAAGAGTTTGAGAGCAATCAACTTGAGCGATAATGGGTTTTCTGGGGTGGTCCCTGCAGGGATTGGGAGTTGCTTGCTTTTGAGATCCATTGATCTCAGTGAAAATTATTTCTCTGGGAGCCTTCCAGAGGACATCCAGAAGCTCACGTTGTGTAGTTATCTGAATGTGCACGGTAACTCATTTTCCAGTGAGCTTCCTGAGTGGATTGGAAAAATGAGTAGTCTTGAGACCTTGGACCTCTCCATGAACAAGTTTTCTGGTCAGTTACCGAGCTCACTTGGTAATCTTCAGTTGTTGAGGATCTTGAATATGTCCAGAAATGGTTTTACTGGAAATCTTCCCGAATCATTAACTAATTGCACAAGCCTCTTGACGTTAGATATCAGTATGAATTCAATGGAAGGTGCTGTTCCCTCGTGGATTTTCAAGTCTGTATCAAAGACAGGCTTGCTTCCAGCTTTCAAGGCTGGAGCCAGGGATCCTTCTCTGTTTTCGCCCATGGAAAATGTTATCCAGCACCTACAAGTCCTAGACTTATCTAGTAACAATTTTTCTGGTGAAATCACATCTGAGGTTTCAGCCTTAAGCAGTTTACGTCTCTTGAATCTGTCAAGGAACTCTATAAGCGGTGTTATTCCACCAACTATCGGAGAAATTAAATCTCTTGTAGATCTTGACTTAAGTCAGAATCGGTTAAGCGGAAGCATCCCCAGCGAAATTGGAGAAGCAATATCTTTGAAGGAACTGAGACTGGAACGTAACTTACTTGGCGGACAAATTCCAATTTCAATCATGAATTGTTCGTTACTATCTATTTTGATATTATCTGAAAACAGACTGACTGGCTCAATACCTGCAGCAATTGGCAAACTTCCCAATCTACAAATTGTGGACCTGTCTTTTAACAACCTTACTGGACCTTTACCCAAGCAATTGGCCAATCTTCTCAATCTTTTTACCTTTAATATATCTCACAACAACCTTCAAGGTGAACTGCCTGCTGGTAGCTTTTTCAACACAATCTCTCCTTCCTCCGTCTCTGGTAATCCAATGCTTTGTGGCTCTGCAGTGAATAAGTCATGCCCTGCAGTCCTTCCCAAACCTATTGTTCTAAACCCCAATTCCTCTTCTGATGCCAGTCAAGGTGTCCTCCCTCCAACTTTTGGTCATAAGAGAATTATTCTCAGCATTTCTTCTCTGATTGCAATTGGTGCAGCTGCTGTAATTTTCATCGGTGTGATTGCTATCACAGTTCTCAATCTTCGCTTTCGCACTGCTACATCTCGATCTGCAGTGGCCCTCGCAATGTCTGGTGGAGATGACTATAGCCAATCCGCTACTACAGATGCCAACTCTGGTAAGCTCGTCATGTTTTCTGGAGAGCCTGATTTCAGCACTGGAGCACATGCATTGCTCAATAAGGATTGTGAGCTTGGCCGCGGTGGATTTGGAGCTGTATACAGAACCATTCTTCGAGATGGCCGCTCCGTTGCAATCAAGAAGCTCACAGTATCGAGTCTCGTGAAGTCCCAGGAAGAATTTGAAAGAGAAGTGAAGAAGTTGGGAAAAGTTAAACACAGACATCTAGTGGCACTCGAAGGCTATTACTGGACTACGTCACTCCAGCTCCTCATATATGAATATGTTCCAGGTGGTAGTTTGTACAGACTTCTTCACGAGGGATCAGATGCAAAATTCCTTTCATGGAATTACCGGTTTAACTTAATTCTTGGAGCGGCAAAAAGCTTGGCATACTTGCACCAATTGAACATAATCCATTACAACATAAAATCTAGCAATGTCCTAATTGATAGCTCTGGGGAAGCTAAAGTTGGAGACTTTGGTCTAGCTAGACTGTTGCCCATGCTTGACCGATATGTTTTAAGCAGTAAAATACAGAGTGCACTTGGGTACATGGCACCAGAATTTGCATGCAGAACAGTTAAGATAACAGAGAAATGTGACATTTATGGCTTTGGAGTTTTGATCTTGGAAGTTGTTACGGGAAAGAGACCTGTGGAGTACATGGAAGATGATGTGGTGGTGCTTTGTGACATGGTCCGGGGAGCACTAGAAGAAGGCAGAGTAGATGCATGTGTGGATGGAAGACTTCAGGGAAGTTTCCCACATGAAGAAGCCATTCCATTGATGAAGTTAGGTTTAATTTGCACGTCACAAGTGCCGTCCAATCGGCCAGACATGGCTGAGGTCGTCAATATATTGGAGCTTATAAGATGCCCTTCTGAAGGCCAAGAGGAATCAGGATGA 2925 0.4308 MRALLGMIAVFSLTFFLVVAPVLGASLNPSLNDDVLGLIVFKADVRDPKGKLESWNEDAESACGWAGVRCNPRSNRVTELNLDDFSLSGKIGRGLLQLQFLRKLSLSKNNLTGSISSNIARIENLREIDLSENNLSGEVPDDFFRQCGSLRGITLAKNKFSGEIPASLTSCSSLATIDFSFNQFSGSIPPGIWSLSGLRSLDLSHNLLKGEVPKGIEESKSLRAINLSDNGFSGVVPAGIGSCLLLRSIDLSENYFSGSLPEDIQKLTLCSYLNVHGNSFSSELPEWIGKMSSLETLDLSMNKFSGQLPSSLGNLQLLRILNMSRNGFTGNLPESLTNCTSLLTLDISMNSMEGAVPSWIFKSVSKTGLLPAFKAGARDPSLFSPMENVIQHLQVLDLSSNNFSGEITSEVSALSSLRLLNLSRNSISGVIPPTIGEIKSLVDLDLSQNRLSGSIPSEIGEAISLKELRLERNLLGGQIPISIMNCSLLSILILSENRLTGSIPAAIGKLPNLQIVDLSFNNLTGPLPKQLANLLNLFTFNISHNNLQGELPAGSFFNTISPSSVSGNPMLCGSAVNKSCPAVLPKPIVLNPNSSSDASQGVLPPTFGHKRIILSISSLIAIGAAAVIFIGVIAITVLNLRFRTATSRSAVALAMSGGDDYSQSATTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYRTILRDGRSVAIKKLTVSSLVKSQEEFEREVKKLGKVKHRHLVALEGYYWTTSLQLLIYEYVPGGSLYRLLHEGSDAKFLSWNYRFNLILGAAKSLAYLHQLNIIHYNIKSSNVLIDSSGEAKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDIYGFGVLILEVVTGKRPVEYMEDDVVVLCDMVRGALEEGRVDACVDGRLQGSFPHEEAIPLMKLGLICTSQVPSNRPDMAEVVNILELIRCPSEGQEESG* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00959 974 SUPERFAMILY L domain-like 221 595 - -
Pte16g00959 974 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 32 310 - -
Pte16g00959 974 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 768 969 - -
Pte16g00959 974 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 31 960 - -
Pte16g00959 974 Pfam Leucine rich repeat 392 451 IPR001611 GO:0005515
Pte16g00959 974 Pfam Leucine rich repeat 464 523 IPR001611 GO:0005515
Pte16g00959 974 Gene3D Ribonuclease Inhibitor 32 188 IPR032675 -
Pte16g00959 974 Gene3D Ribonuclease Inhibitor 189 285 IPR032675 -
Pte16g00959 974 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 311 584 - -
Pte16g00959 974 SUPERFAMILY Protein kinase-like (PK-like) 695 958 IPR011009 -
Pte16g00959 974 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 685 767 - -
Pte16g00959 974 ProSiteProfiles Protein kinase domain profile. 691 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte16g00959 974 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Pte16g00959 974 PRINTS Leucine-rich repeat signature 441 454 - -
Pte16g00959 974 PRINTS Leucine-rich repeat signature 510 523 - -
Pte16g00959 974 Gene3D Ribonuclease Inhibitor 390 584 IPR032675 -
Pte16g00959 974 Gene3D Transferase(Phosphotransferase) domain 1 768 972 - -
Pte16g00959 974 SUPERFAMILY L domain-like 60 305 - -
Pte16g00959 974 SMART LRR_typ_2 438 462 IPR003591 -
Pte16g00959 974 SMART LRR_typ_2 291 315 IPR003591 -
Pte16g00959 974 SMART LRR_typ_2 414 436 IPR003591 -
Pte16g00959 974 SMART LRR_typ_2 534 558 IPR003591 -
Pte16g00959 974 SMART LRR_typ_2 195 219 IPR003591 -
Pte16g00959 974 SMART LRR_typ_2 510 533 IPR003591 -
Pte16g00959 974 SMART LRR_typ_2 122 146 IPR003591 -
Pte16g00959 974 Gene3D Phosphorylase Kinase; domain 1 684 767 - -
Pte16g00959 974 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Pte16g00959 974 Gene3D Ribonuclease Inhibitor 286 372 IPR032675 -
Pte16g00959 974 CDD STKc_IRAK 697 963 - -
Pte16g00959 974 Pfam Protein tyrosine and serine/threonine kinase 693 959 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00959 Pte-Chr16 29107444 29112376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00959 10 974 Receptor kinase-like Gene Family AT3G56370 67.456 0.0 1249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Pte16g00959 PK_Tyr_Ser-Thr 3.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00959 - - qsa:O6P43_014848 1457.58