Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00953 ATGGTGGCTCTTCATCACAGTCCTCACCGGCTACTCCTAAACACAGATTCAAACTCACAGGCACCAGCAGTTGGAAATAGGCCAAGAGGGTCGTACCCAAATGAGACCAATTTCGACACCAACATGGTTATCATACTGGCAGCTCTGCTCTGTGCTTTGATATGCGCTCTAGGACTTAATTCGATAGTGAGGTGTGCTATGAGATGTAGCCGGAGATTTTCTTTCGAGACAGCAGATGAGACTGCTTCAAGGTCAGCAGGAAAGGGACTGAAGAAGAGTACACTGCGAAAGATTCCGGTTGCAATTTATGGTTCAGGTACACATATTCCAGCTACAGATTGCCCTATTTGCCTTGGAGAATTCATTGATGGCGAGAAAGTTAGAGTCTTGCCAAAATGTAACCATGGTTTCCATGTCAAGTGCATAGACACCTGGTTATTATCACACTCATCTTGTCCAACTTGCCGACAGTGTTTGCTTGAACCACCAATAAGTTCTGATGCAGTTGATGTTGGCGAAGATAGACCCCATGTAGTAAATATCTCAGAAGGACATGGGGACGTGCCTGTATCCATGGATGAGATTGGCTAG 591 0.4552 MVALHHSPHRLLLNTDSNSQAPAVGNRPRGSYPNETNFDTNMVIILAALLCALICALGLNSIVRCAMRCSRRFSFETADETASRSAGKGLKKSTLRKIPVAIYGSGTHIPATDCPICLGEFIDGEKVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQCLLEPPISSDAVDVGEDRPHVVNISEGHGDVPVSMDEIG* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00953 196 Pfam Ring finger domain 113 156 IPR001841 -
Pte16g00953 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 160 IPR013083 -
Pte16g00953 196 MobiDBLite consensus disorder prediction 13 32 - -
Pte16g00953 196 CDD RING-H2_EL5-like 113 156 - -
Pte16g00953 196 SUPERFAMILY RING/U-box 94 162 - -
Pte16g00953 196 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Pte16g00953 196 PANTHER RING-H2 FINGER PROTEIN ATL78 18 162 IPR044602 GO:0016567|GO:0016740
Pte16g00953 196 SMART ring_2 114 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00953 Pte-Chr16 29054157 29055681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00953 10 181 C3H Transcription Factor Family AT3G10910 58.791 3.46e-61 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00953 - K19040 qsa:O6P43_020103 289.271