Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00946 ATGGCCACTGCATGTCGAATCTGTGCGCCTCCTTCTGTTACTGGGTTTGGTTATTTGCAGAGGCGCAACATAGGCATTGACTGTCCAGTTAAAGGTGTAACCGGTAAGAAGATGGATGACGAGGTTGAGTTAGGAGCGACAGTTCCTGAATCAGCCACAAAGCAAAGTAGCACATTGGCAATTGGTTCAAGTAGTTATGGGAGTAATCCACCTTGGTCTAACAATTCCAGTTCTGCAAGCAGTTTGGTGAGATTGTTTCAACAATTTGGTGAGATTGTGATGGCCAAAGATATTAAGGACCGTGCAACCAATCTGAGTAAAGGTTATGGTTTTGTCAAGTATGCTGATATCCAAATGGCCAATAATGCTATTATGGCTATGAATGGTTATCAACTTGAAAGACGGACTATAGAGGTGAGAGTTGTTGGCAAACCACCTCAGCCAACTGTACCTCCTGGTCCTCCAGCATCTGCATTGGCATCAACGTATCCTGTTGCAAGCCAAGCAGTTGCGACATATTCATCTCAGCAATATGCAGCTGGTGGTCCCTAG 552 0.4493 MATACRICAPPSVTGFGYLQRRNIGIDCPVKGVTGKKMDDEVELGATVPESATKQSSTLAIGSSSYGSNPPWSNNSSSASSLVRLFQQFGEIVMAKDIKDRATNLSKGYGFVKYADIQMANNAIMAMNGYQLERRTIEVRVVGKPPQPTVPPGPPASALASTYPVASQAVATYSSQQYAAGGP* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00946 183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 144 IPR000504 GO:0003723
Pte16g00946 183 SMART rrm1_1 58 140 IPR000504 GO:0003723
Pte16g00946 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 137 IPR000504 GO:0003723
Pte16g00946 183 PANTHER TRANSFORMER-2-RELATED 80 142 - -
Pte16g00946 183 SUPERFAMILY RNA-binding domain, RBD 78 153 IPR035979 GO:0003676
Pte16g00946 183 Gene3D - 36 141 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00946 Pte-Chr16 29009145 29010270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00946 46 149 Eukaryotic Initiation Factors Gene Family AT3G11400 30.000 6.38e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00946 K13095 - gmx:100800982 185.267