Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00938 ATGTCCAGAGAAAGGGAAAGATTTGATGAGATAGGCAAGAAGATCAAGAGGGAAGGAGATGCTTATTTTCAAATGGGAAGAAGACACATGTTGGGTCCTCCAGGAACCCTAAATACCATCACACCATGTGCAGCCTGTAAGCTCTTGAGACGAAGATGTGCTCAAGAATGCCCCTTTTCTCCATACTTCTCACCTCATGAACCTCAAAAGTTCGCTACTGTTCACAAAGTCTTTGGTGCTAGCAACGTCTCAAAGATGCTGATGGAGGTACCTGAGTGCCAAAGAGCTGATGCTGCCAATAGTCTTGTATATGAAGCCAATATGAGGCTAAGAGATCCAGTGTATGGATGCATGGGTGCAATTTCAACTTTACAACAACAGGTTCAATCTTTACAGGCTGAGCTTAATGCAGTAAGAGCCGAGATACTTCAAAACAAACTTAGGGAGGAGAATATGATACCTTCTCCTCATGTAGCTTTGCTCTCTTGCTCTAATACTATTTCTTTTACAGCCCCTCCACCAGCACCAACACCGCCTACTCCTGCACTGCCTCCACCTCCTTCTTCTACTTCGTATACCCAACAAACTGCTGGCACCGATTACAGCACAATTAATATTTCAAGTGACAACAATATCTACATCGGTTAA 648 0.4367 MSRERERFDEIGKKIKREGDAYFQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFATVHKVFGASNVSKMLMEVPECQRADAANSLVYEANMRLRDPVYGCMGAISTLQQQVQSLQAELNAVRAEILQNKLREENMIPSPHVALLSCSNTISFTAPPPAPTPPTPALPPPPSSTSYTQQTAGTDYSTINISSDNNIYIG* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00938 215 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Pte16g00938 215 MobiDBLite consensus disorder prediction 171 188 - -
Pte16g00938 215 MobiDBLite consensus disorder prediction 170 200 - -
Pte16g00938 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 38 176 - -
Pte16g00938 215 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Pte16g00938 215 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00938 Pte-Chr16 28863388 28864647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00938 1 155 AS2 family AT2G30340 66.061 3.55e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte16g00938 LOB 1.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00938 - - ccaj:109797870 317.39