Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00923 ATGGGAGCTTATGATCGAGGGTCTAACTTGCAATCTTTTCAACTGGATAGTACAAGGAAGAGGAAAACAAGGAGTAGAAAAGATGGGTCTAAATCTGTTTCTGAGACTTTAGCTGAGTGGAAAGCATATAATGATCGAATCGAAGCTTGCAGTGACGAGAGTAAACCAACTCGTAAAACACCTGCAAAGGGGTCTAAGAAAGGTTGTATGAAAGGTAAAGGAGGGCCGGAGAATTCACGTTGTAACTACAGAGGTGTTAGGCAAAGGACGTGGGGCAAGTGGGTGGCTGAAATCAGAGCGCCTAACCGTGGAAAGAGGCTTTGGTTGGGTACTTTCCCTAATGGAATTGAAGCTGCTCGTGCTTATGATGAGGCTGCACGAGCTATGTATGGTAGTGCTGCCCGTCTCAATTTTCCTAATGTCAATGATTGTAACTCGTATAGGCAAGCTGTGAGTGACACCTCTGCTTCTGCAACCTTTTCAAGCTCTTCATTGGCTACTTCAACTGGTTCGGCTTCAACAAGTGCATCGGAAGCTGGTGGGGCTGATATTATGAAGGTGCAGGTTGGGAACACGGATGAAGGTTATCGAGATGGAGGAACTGAAGTTTATAGGTCATTTTCTGAAGCTGTAGAAGCTAACTCACATATTAGTGCTGTGAAAGAAGAGCCTGTTGATGGTGAAATGCAAAAACCACAAAGTTGTCACAACTCAAAAGTGGAGGAAAACCATGTCTTCCGGTTGGCAAATGATAGTCAGCATCAGGGTGCATCTAATTTTGTCTGGGACTTCGATGATGCTGATATCTTTCAAAATTTCACTGAGGAGGAGATGTTTGATGTCCGTGATCTTCTCGGTAGCATAGAGAAGGATCCTCTTGATTCGCTTTTAAGTTCCTCTCTCGACAATCATCTGCAAAGTGAATTTCTCTCGGATTTGTCGTATCAGATGCAAAACCCAGATGCCAAATTGTTAGGTGGCTCGCAACACATGGTGCAGGCGTCATCAAGTGTCGATTATAGTTTTGATTTCCTTAAACCGGCGATAGCTGAAGAAAATGGTAACAATGGAGAGGAGCAACGCCATCTTGATTTTGGTTTGTCTGATATTGATTTTGGAAACCATGAATTCAGCTCGGAAAAGAAACCTTTGCTGCCAGAGTGA 1164 0.4381 MGAYDRGSNLQSFQLDSTRKRKTRSRKDGSKSVSETLAEWKAYNDRIEACSDESKPTRKTPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIRAPNRGKRLWLGTFPNGIEAARAYDEAARAMYGSAARLNFPNVNDCNSYRQAVSDTSASATFSSSSLATSTGSASTSASEAGGADIMKVQVGNTDEGYRDGGTEVYRSFSEAVEANSHISAVKEEPVDGEMQKPQSCHNSKVEENHVFRLANDSQHQGASNFVWDFDDADIFQNFTEEEMFDVRDLLGSIEKDPLDSLLSSSLDNHLQSEFLSDLSYQMQNPDAKLLGGSQHMVQASSSVDYSFDFLKPAIAEENGNNGEEQRHLDFGLSDIDFGNHEFSSEKKPLLPE* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00923 387 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Pte16g00923 387 CDD AP2 81 141 IPR001471 GO:0003700|GO:0006355
Pte16g00923 387 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 19 347 - -
Pte16g00923 387 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Pte16g00923 387 MobiDBLite consensus disorder prediction 50 81 - -
Pte16g00923 387 MobiDBLite consensus disorder prediction 159 179 - -
Pte16g00923 387 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Pte16g00923 387 Gene3D AP2/ERF domain 82 141 IPR036955 GO:0003700|GO:0006355
Pte16g00923 387 FunFam Ethylene-responsive transcription factor 2 81 140 - -
Pte16g00923 387 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
Pte16g00923 387 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Pte16g00923 387 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Pte16g00923 387 MobiDBLite consensus disorder prediction 17 34 - -
Pte16g00923 387 MobiDBLite consensus disorder prediction 159 178 - -
Pte16g00923 387 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00923 Pte-Chr16 28625797 28628049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00923 8 373 AP2-EREBP Transcription Factor Family AT2G40340 37.568 1.29e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte16g00923 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00923 - K09286 pcin:129294142 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00923 16 28625797 28628049 Pte16g00923 16 28625797 28628049 RCT