Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00920 ATGGGTGGAAATTCTCCCTGTGCTTCGTGTAAGTTGTTAAGACGCAGATGTGCCCATGACTGCATCTTTGCTCCTTACTTCCCTTCAGATGACCCCCACAAGTTTGCCATAGTTCACAAGGTTTTTGGCGCTAGCAATGTCAGCAAAATGTTGCAGGAACTTCCAGTTCACCAGAGAGCAGATGCTGTGAGCAGTCTAGTATATGAAGCAAATGCAAGAGTTAGAGACCCAGTTTATGGTTGTGTTGGAGCTATATCCTACCTGCAAAACCAGGTGTCCGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAAATACTTTGCATACAGATGCAACATGAGCCTGTGATGGCCCCACAAATTGATCCGCCAGAGGATAAATCATATTTTCTCCACAACAACTTTCCTCAATACTTCAAATTTTCTTCCACTAGCGATGTGATTCATGATTCTCTCAAGAGAGAGGGAATTTTTGGCCATGACATGGTTTCTTGA 495 0.4424 MGGNSPCASCKLLRRRCAHDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHEPVMAPQIDPPEDKSYFLHNNFPQYFKFSSTSDVIHDSLKREGIFGHDMVS* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00920 164 Coils Coil 85 105 - -
Pte16g00920 164 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Pte16g00920 164 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Pte16g00920 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00920 Pte-Chr16 28545535 28547884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00920 3 117 AS2 family AT2G30130 92.174 3.72e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte16g00920 LOB 1e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00920 16 28545535 28547884 Pte8g00772 8 31052000 31052730 RCT
Pte16g00920 16 28545535 28547884 Pte16g00920 16 28545535 28547884 RCT