Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00910 ATGGATATGGCTGCTGCTGTTTCATCTATGATGGTTCCTTCTGGATTTTTTCCAACATGTTCTTTGCTACAATCTTTGCTACATGCAGCAACTGAAGTTGCGTTCATGGAAAAGCTCCCATGTGTACAGGTAAGAAATGTGACAACCATGGTAAGAAGAGTGAAGCTTCTTTCTTCATTGTTTGAAGAGATTCAAGAGACGCAAAACCCACTTCCTCCATCCTCTATCCTATGCCTAACAGAGCTTTGCTCTGTAATTAGGAGAGTGAAGGTTTTGATACAAAGCTGTAAGGATGGAAGCTCTCTTTGGAGTCTCATGCAGATTGATTTTGTCTCTAATCAATTCTATGTGCTGGTGAAAGACATGGGCAGAGCTCTTGATATTCTGCCACTGAGTTTGCTTAACATAACTGCAGATACAAGAGAGCAAGTGGAGCTTCTGCACAAACAGGCCAAGAGGGTACAGTTGTTTGTTGATCCTAGAGAGATTCAGCGTAGGGAAGATCTTCTTCATTTCATGATGGCCAACAACAACACCATGATCCAGAAGAAGAGTTTCACTGATATTGAGAAATTGCAGGTGATATTAAGAAGCATTGGTTTGAGAGATGTATCAGATTATGATGAAGAAATATCAAAGCTTGAGGCTGAAGCACAGAAGCAAGCAGGTACAGGTGGACTTATAGTTGTGTCTAATATATACAATCTTATATCTCTAGTTTCCTATTCAAAATCCATGATATTCAGTAATTTCCAAGAGGATAAAAGAAAAAAAGAATCCACCAGTGTCATAGGTACTACCAACCATGAAACCTGTTGTTCATCTTCTCAGTCCACAGAACTACCTAATATTCCTGACGAATTTCGTTGTCCTATTTCACTCGAATTGATGAGAGATCCCGTGATAATCTCATCTGGCCATACCTATGATCGGAATTCCATCGCGCAGTGGATCAATTCAGGTCATCATACTTGTCCCAAAAGTGGGAAGAGGCTGATTCACACAGCCTTGATTCCAAACTATGCATTGAAAAGTTTAATCCATCAGTGGTGTCATGATAATAATATCGCATTGACTGAGCCTACGTCAATGTCGTCCTCAAACTTGGACAGAAATAACAGCATAAGAAAGTCAAATGATACTGCCGTTGACCACATTTCAGCAAGCAAAGCAGCTATTGATGCTGTCAAAATGACAGCTGAGTTTTTAGTTGGGAAATTGGCAATGGGGTCTAGAGATATTCAGCGACAGGCTGCGTATGAACTGCGATTGCTCGCGAAATCTGGGATGGAAAATCGGAGAATCATAGCTGAGGCAGGAGCTATTCCATTTTTAGTAACATTACTAGGTTCACATGATCCTAGAATTCAGGAAAATGCTGTCACAGCTTTGTTTAACCTGTCTATATTTGACAACAACAAAGTACTGATAGTGGCAGCTGGAGCTGTTGACAACATAATTGAAGTACTTGAATCTGGGAGAACCATGGAGGCAAAGGAAAATGCAGCAGCAGCTATATACAGTCTGTCAATTATAGATGATTGTAAGAAAACAATTGGAGACAGACCAAGAGCCATACCTGCATTAGTAGTCCTCTTAAGAGAAGGCAGTCCTGTCGGAAAACAAGATGCTGCCACTGCACTTCTCAATCTTGCAGTGTACAACCCCAATAAAGCACGTATTGTCGCTGCTGGGGCAGTTCCTTTGCTAATTGAGCTGTTGATGGATGACAAGGCTGGAATAACTGATAATGCCTTGGGAGTGCTTGCTTTGCTTCAGGGTTGCTCTCAAGGTCTGGAAGAGATAAAAAAGAGTAGAGCTTTGGTGCCCCTCCTCATTGATCTTTTGAGATTTGGTTCAGCTAAAGGGAAAGAAAATGCTATAACACTTCTACTGGGGCTGTTTAAAGAAGAAGGAGAATTGGTGGCGAAGCGTTTGTTGGCAAATCCAAGAAGCATTCCTTCACTTCAGAGTTTGGCTGCTGATGGTTCACTGAGAGCTCGAAGAAAAGCAGAAGCCTTGCTTAGATTACTCAGTAGATGTTGTTCTCAAGCTAACAGTAACTCTTGCTGA 2073 0.4139 MDMAAAVSSMMVPSGFFPTCSLLQSLLHAATEVAFMEKLPCVQVRNVTTMVRRVKLLSSLFEEIQETQNPLPPSSILCLTELCSVIRRVKVLIQSCKDGSSLWSLMQIDFVSNQFYVLVKDMGRALDILPLSLLNITADTREQVELLHKQAKRVQLFVDPREIQRREDLLHFMMANNNTMIQKKSFTDIEKLQVILRSIGLRDVSDYDEEISKLEAEAQKQAGTGGLIVVSNIYNLISLVSYSKSMIFSNFQEDKRKKESTSVIGTTNHETCCSSSQSTELPNIPDEFRCPISLELMRDPVIISSGHTYDRNSIAQWINSGHHTCPKSGKRLIHTALIPNYALKSLIHQWCHDNNIALTEPTSMSSSNLDRNNSIRKSNDTAVDHISASKAAIDAVKMTAEFLVGKLAMGSRDIQRQAAYELRLLAKSGMENRRIIAEAGAIPFLVTLLGSHDPRIQENAVTALFNLSIFDNNKVLIVAAGAVDNIIEVLESGRTMEAKENAAAAIYSLSIIDDCKKTIGDRPRAIPALVVLLREGSPVGKQDAATALLNLAVYNPNKARIVAAGAVPLLIELLMDDKAGITDNALGVLALLQGCSQGLEEIKKSRALVPLLIDLLRFGSAKGKENAITLLLGLFKEEGELVAKRLLANPRSIPSLQSLAADGSLRARRKAEALLRLLSRCCSQANSNSC* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00910 690 SUPERFAMILY RING/U-box 274 360 - -
Pte16g00910 690 SMART Ubox_2 287 350 IPR003613 GO:0004842|GO:0016567
Pte16g00910 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 524 566 IPR000225 GO:0005515
Pte16g00910 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 440 482 IPR000225 GO:0005515
Pte16g00910 690 FunFam RING-type E3 ubiquitin transferase 362 517 - -
Pte16g00910 690 Gene3D - 23 134 IPR036537 GO:0007166
Pte16g00910 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 359 IPR013083 -
Pte16g00910 690 SMART arm_5 595 636 IPR000225 GO:0005515
Pte16g00910 690 SMART arm_5 429 469 IPR000225 GO:0005515
Pte16g00910 690 SMART arm_5 512 553 IPR000225 GO:0005515
Pte16g00910 690 SMART arm_5 554 594 IPR000225 GO:0005515
Pte16g00910 690 SMART arm_5 470 511 IPR000225 GO:0005515
Pte16g00910 690 Pfam U-box domain 284 355 IPR003613 GO:0004842|GO:0016567
Pte16g00910 690 ProSiteProfiles U-box domain profile. 283 357 IPR003613 GO:0004842|GO:0016567
Pte16g00910 690 Coils Coil 204 224 - -
Pte16g00910 690 Gene3D - 372 522 IPR011989 -
Pte16g00910 690 Gene3D - 523 680 IPR011989 -
Pte16g00910 690 SUPERFAMILY ARM repeat 400 680 IPR016024 -
Pte16g00910 690 Pfam Armadillo/beta-catenin-like repeat 555 590 IPR000225 GO:0005515
Pte16g00910 690 Pfam Armadillo/beta-catenin-like repeat 431 468 IPR000225 GO:0005515
Pte16g00910 690 PANTHER U BOX DOMAIN-CONTAINING 46 683 - -
Pte16g00910 690 FunFam RING-type E3 ubiquitin transferase 283 357 - -
Pte16g00910 690 CDD RING-Ubox_PUB 285 337 IPR045210 -
Pte16g00910 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 565 607 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00910 Pte-Chr16 28307888 28310060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00910 21 684 U-box Gene Family AT3G46510 38.266 1.93e-129 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00910 - - qsa:O6P43_013820 1005.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00910 16 28307888 28310060 Pte16g00910 16 28307888 28310060 RCT