Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00898 ATGTCAAATCAAGACAGTCAATCGTTTCATTGGCCGTACAATGAGCTAGACGACCGGAACTTTCAAATCCGTGGCCGCACCCTCTTCTTCATCATCGTTCTCTTCTCCATCGTGCTTGCAATCACTCTGCTCTTCATCTACGTACGTTGGCTCTGTCGTTTCCATGCCCAGTACTTCAGTACCACCTTCCACTCACTCCGCCCTTCTCAGCCTCACCCGCAATCGACGTTGCAGCCTCAGGGACTGGATCCCGCCTCTATTCAGAAGTTACCCATGATTTTATATCAAGCTCCGCCGCCGGATTCGAACGGTGGTCATGGGGTGCAGGATGAAACAGAATGCTGCATCTGCCTAGGTGAGTTCAGAGATGGTGAGAAGTTGAAGGTTTTACCTGGGTGTAACCATTGTTTTCACTCTGAATGTGTTGACAAGTGGCTTACTTGTCACTCCAATTGCCCAATTTGCAGAGCTTGTCTTCGATTTGATTCTGAGCTTCCTAGAATTTTGATTGAGGAACCACCCATCAGAATCAATGTTCAACAACCAGCAGTACAAGCTAGCTAG 564 0.4805 MSNQDSQSFHWPYNELDDRNFQIRGRTLFFIIVLFSIVLAITLLFIYVRWLCRFHAQYFSTTFHSLRPSQPHPQSTLQPQGLDPASIQKLPMILYQAPPPDSNGGHGVQDETECCICLGEFRDGEKLKVLPGCNHCFHSECVDKWLTCHSNCPICRACLRFDSELPRILIEEPPIRINVQQPAVQAS* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00898 187 Pfam Ring finger domain 113 156 IPR001841 -
Pte16g00898 187 SUPERFAMILY RING/U-box 108 162 - -
Pte16g00898 187 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 26 158 IPR044675 -
Pte16g00898 187 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Pte16g00898 187 CDD RING-H2_EL5-like 113 156 - -
Pte16g00898 187 SMART ring_2 114 155 IPR001841 -
Pte16g00898 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 160 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00898 Pte-Chr16 28155663 28156430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00898 2 164 C3H Transcription Factor Family AT3G11110 42.331 3.93e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00898 - - gmx:100794927 226.483