Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00897 ATGGGTAGATCCAACTTTGGAAGTTCATCTCTAAATTTAACTATGGAAAATTACTACTCCTCTGACACCGGAAGTTGGGTGTGCAGCACTGCAGCTGATCCTCCTGGTTTTGCTGCAGTGGGAATTCCGCTACTGCCTCAAGGTTTGTCCTCGACGTCTTTTCAGGTTTCTGAGTTTCCTTCATGGCCACTTCCAACTGATGTGGAGGAACGAGCTGCAAATGCTTCCAGAAGCCATAGCCTAGCCGAGAAGAGACGTAGAGACAGAATTAATGGACATCTATCAACTCTTAGAAAACTCATCCCCAAATCTGATAAGATGGACAAGGCAGCACTACTAGGGAGTGTGATAGAGCAAGTGAGAGAGCTAAAGCGAAAGGCAATTGATGTTAGCAAGGCGTACACTGTGCCGACAGAGTTTGATGAAGTAAACATTGAGTATCATACATCAGATGAAAGCTTTGCTGGAACAAACAAATTGAAAGACAAAACCGCAATAAAGGCTTCCGTTTGCTGTGATGATCGACCAGAAGTGTTATCAGAGCTTGTTCAAGTTCTCAATGGTCTGAGACTGAGTGCTATCCAAGCAGATATAGCTAGTGTTGGTGGACGAATGAAGAGCATATTGATTCTGTGTTCTATGGAAAATGAAGAGACTCAGTCCCTTCATTGCATCAAACAGTCACTGAGGTCACTTGTGAATAGGATTTCATCGGAATCCATGGTACCAAGTTGTCGCATTAGGAGTAAAAGGCAGAGGTTTTTCTTGCCATCCCATTATTCACAGTAA 789 0.4347 MGRSNFGSSSLNLTMENYYSSDTGSWVCSTAADPPGFAAVGIPLLPQGLSSTSFQVSEFPSWPLPTDVEERAANASRSHSLAEKRRRDRINGHLSTLRKLIPKSDKMDKAALLGSVIEQVRELKRKAIDVSKAYTVPTEFDEVNIEYHTSDESFAGTNKLKDKTAIKASVCCDDRPEVLSELVQVLNGLRLSAIQADIASVGGRMKSILILCSMENEETQSLHCIKQSLRSLVNRISSESMVPSCRIRSKRQRFFLPSHYSQ* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00897 262 Pfam Helix-loop-helix DNA-binding domain 77 123 IPR011598 GO:0046983
Pte16g00897 262 SMART finulus 80 129 IPR011598 GO:0046983
Pte16g00897 262 CDD bHLH_AtAIG1_like 69 145 - -
Pte16g00897 262 PANTHER TRANSCRIPTION FACTOR BHLH30 67 260 IPR045847 GO:0003700|GO:0006355
Pte16g00897 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 123 IPR011598 GO:0046983
Pte16g00897 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 126 IPR036638 GO:0046983
Pte16g00897 262 Gene3D - 68 131 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00897 Pte-Chr16 28143270 28144816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00897 48 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 51.131 8.66e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte16g00897 HLH 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00897 - - gmx:100799687 297.36