Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00880 ATGGCTTCTCTGTCTTCAAGCCCACGCACAGTCGAAGAGATCTTCAAGGACTATAGCGCACGACGCAATGCCATCGTCCGAGCTCTCACACATGATGTCGATGACTTTTATGCGCTTTGTGATCCGGAGAAGGAGAATCTATGCTTATATGGACACCCGAATGAGTCATGGCAGGTGACTTTACCCGCAGAAGAAGTTCCGCCTGAACTTCCGGAGCCTGCTTTAGGTATCAATTTTGCAAGAGATGGAATGAAGCGTATAGATTGGCTCTCTTTGGTTGCTGTGCATAGCGACTGCTGGTTATTTTCTGTAGCATTCTACTTCGGTGCTAGGCTCAATAGGAATGACAGGAAGCGACTGTTCAGCCTCATGAATGATCTGCCTACTGTATTTGAAGTTGTCACAGGAAGAAAGCCTGTAAAAGAGAAGCCAGCTGTAGAAAGTGGAAGCAAATCTAAAAATAGCTCAAAGGTGATGAAATTTCTAAACAATTTAAGTTTGTTGTTCCTTTGGAATCCATGTTCATTTTGTAGTTTTGCTTTGCAATGA 549 0.4372 MASLSSSPRTVEEIFKDYSARRNAIVRALTHDVDDFYALCDPEKENLCLYGHPNESWQVTLPAEEVPPELPEPALGINFARDGMKRIDWLSLVAVHSDCWLFSVAFYFGARLNRNDRKRLFSLMNDLPTVFEVVTGRKPVKEKPAVESGSKSKNSSKVMKFLNNLSLLFLWNPCSFCSFALQ* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00880 182 PANTHER CPG BINDING PROTEIN 7 158 IPR045104 GO:0006355|GO:0042393
Pte16g00880 182 Pfam Alfin 10 136 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00880 Pte-Chr16 27942821 27946549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00880 1 157 Alfin-like Transcription Factor Family AT5G05610 77.215 8.75e-77 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00880 K26274 - jre:109007164 291.582