Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00879 ATGTGCTGTGTTTCGAAGAGTAAACTAATCCCCTCAAATCAAATCATGGAAAACCAGTCACAGGAGCAGATTGGAGATGGTTTCTACAAGTTATCGGTTTTGCTTGAGTTGTCTGCATCTGATGATCTTGAAGCCTTTAAACGTGAATTGGAAGAGAAGGGTAAGAACGCTGATGAATCAAGCTTTTGGTATGGAAGGAGAATGGGCTCAAAAAAGATGGGGTATGAGGAGAGGACACCACTTATGATTGCTTCCATGTATGGAAGCACAAAGGTCTTGAAGTATCTGGTTGAGGCAGGCAAGGCTGATGTCAACAGGGCATGCGGATCTGATAAGGCCACTGCTCTCCACTGTGCTGTTGCTGGTGGTTCCGAGTCTTCCCTTCAGATTGTTAAACTATTGCTTGATGCTCAGGCAGACGCCGAACGTGATGATGCTAATGGAAACAAGCCTATTAGCTTGATAGCCCCTGCTTTCAATCATGCTGCTAATTTGCGAAGGAAGGCCATGGAGTTGTTGCTGACAGGTGGTAAGTTAGCTGAAGAAGGTGATGAATTAATTGAACATGAGTTCCAGAAGAAGATGACAACTTCTCTATCATATTCTAAAGAAGGAGCTGAGAAGAAAGAATATCCTATTGATATATCACTTCCTGACATTAACGATGGTATATATGGATCTGATGAGTTTAGGATGTACTCCTTCAAGGTTAAGCCTTGCTCTAGGGCTTATTCTCACGACTGGACTGAGTGTCCGTTTGCTCATCCAGGGGAGAATGCCAGGAGAAGAGACCCCAGGAAGTATCCATATAGCTGTGTTCCTTGTCCAGAGTTTCGTAAAGGGACATGCCAGAAGGGTGATTCTTGTGATTATGCTCATGGTGTTTTTGAATCTTGGCTACATCCTGCTCAGTATCGAACTCGGCTTTGCAAGGACGAGACTGGATGCACCAGGAAAGTCTGCTTCTTTGCTCACAAGACTGAAGAATTACGTCCTGTGTATGCTTCTACCGGCTCAGCTATGCCATCACCGAAGTTTACAGCAAGCAGCTCAATTGATATGTCAATGATGAGTCCATTAACGCTTAATTCATCATCTTTGCCGACGACAACTGTTTCAACCCCACCCATGTCTCCTTTGGCAGCTTCTTCCACGCCTAAAAATGGAAACTTGTGGCAGAACAAGATCAACCTTACCCCACCGTCCTTGCAGCTCCCAGGTAGCCGACTGAAGACGACTTTGAGTGCAAGGGATTTTGATATGGGGATGGATGTCCTTGGACTGGGAAGCCATGGTAGTCAACAGCAGCAGCTTTTGATGGAAGAGATATCTCGACTCTCCTCTCCCTCTCTGAGGAATAGCAGCAGAACGTGTGATTTGCAGGCTACCAATCTTGATGAGCTTTTGGCTTCTGTAGATCCTTCCATTTTGTCTCAATTCCAGGGCCTCTCAGGAAATCCTTCAACACCTACCAGATTGCAGTCTTCAACTGGAATTCCGATGCACCAAAATTTGAACCAGCGTGCAAGTTATTCGACCAACCTACAATCTTCCCCACTGAGAAAGCCCTCTGTCTATGGGTTTGATTCATCTGCTGCTGTGGCTGCAGCTATGATGAATGCTAGATCTTCTGCATTTGCTAAGCGCAGCCAGAGTTTTATTGACCGCGGAGCAGGTCCCTACAATTCTGGGCTGTCTGTGAATTCAAACTCATCTCCTAGGATGTCTTCCAATCTTTCAAATTGGAGCTCCCCAGATGGCAAACTCGATTGGGGTTTGCATGGAGATGAGCTGAACAAGCTAAAGAAATCATCTTCTTTTGCATTCAGAAGTAACAATCCAATGCCGAACACCAACCACACCCTGACATCTTCAATTTCTGAGGAGCCAGATGTGTCTTGGGTTAATTCCTTGGTCAAAGATGTTTCCTTTGAGGGTTCCAGAATGTACAGTTCTGAGAAGCTGCAAAGTGATTTAAGCAAAGAGTTGCTTCCACCATGGGTTGAACAGATGTATATGGAACACGAGCAAATGGTGGCATAA 2043 0.4518 MCCVSKSKLIPSNQIMENQSQEQIGDGFYKLSVLLELSASDDLEAFKRELEEKGKNADESSFWYGRRMGSKKMGYEERTPLMIASMYGSTKVLKYLVEAGKADVNRACGSDKATALHCAVAGGSESSLQIVKLLLDAQADAERDDANGNKPISLIAPAFNHAANLRRKAMELLLTGGKLAEEGDELIEHEFQKKMTTSLSYSKEGAEKKEYPIDISLPDINDGIYGSDEFRMYSFKVKPCSRAYSHDWTECPFAHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDSCDYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKTEELRPVYASTGSAMPSPKFTASSSIDMSMMSPLTLNSSSLPTTTVSTPPMSPLAASSTPKNGNLWQNKINLTPPSLQLPGSRLKTTLSARDFDMGMDVLGLGSHGSQQQQLLMEEISRLSSPSLRNSSRTCDLQATNLDELLASVDPSILSQFQGLSGNPSTPTRLQSSTGIPMHQNLNQRASYSTNLQSSPLRKPSVYGFDSSAAVAAAMMNARSSAFAKRSQSFIDRGAGPYNSGLSVNSNSSPRMSSNLSNWSSPDGKLDWGLHGDELNKLKKSSSFAFRSNNPMPNTNHTLTSSISEEPDVSWVNSLVKDVSFEGSRMYSSEKLQSDLSKELLPPWVEQMYMEHEQMVA* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00879 680 Gene3D - 270 332 - -
Pte16g00879 680 MobiDBLite consensus disorder prediction 367 386 - -
Pte16g00879 680 ProSiteProfiles Zinc finger C3H1-type profile. 269 296 IPR000571 GO:0046872
Pte16g00879 680 SUPERFAMILY Ankyrin repeat 30 160 IPR036770 -
Pte16g00879 680 FunFam Zinc finger CCCH domain-containing protein 66 227 295 - -
Pte16g00879 680 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 294 IPR000571 GO:0046872
Pte16g00879 680 Gene3D - 3 217 IPR036770 -
Pte16g00879 680 ProSiteProfiles Ankyrin repeat profile. 76 100 IPR002110 GO:0005515
Pte16g00879 680 SMART ANK_2a 76 106 IPR002110 GO:0005515
Pte16g00879 680 SMART ANK_2a 111 143 IPR002110 GO:0005515
Pte16g00879 680 Pfam Ankyrin repeats (3 copies) 69 143 IPR002110 GO:0005515
Pte16g00879 680 SMART c3hfinal6 304 327 IPR000571 GO:0046872
Pte16g00879 680 SMART c3hfinal6 269 295 IPR000571 GO:0046872
Pte16g00879 680 PANTHER UNKEMPT FAMILY MEMBER 36 641 IPR045234 -
Pte16g00879 680 ProSiteProfiles Ankyrin repeat region circular profile. 76 100 - -
Pte16g00879 680 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00879 Pte-Chr16 27922979 27925864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00879 29 674 C2H2 Transcription Factor Family AT5G12850 39.148 1.70e-141 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte16g00879 Ank_2 3.3e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00879 - - qsa:O6P43_013842 907.131