Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00869 ATGGTGAGGGCTACTTCCAAGGCTGATAAGAAGCTTGCTTATGATGCAAAGCTTTGCCACCTGCTGGATGAGTATTCCCAAATCTTGATTGTGGCGGCGGACAATGTTGGGTCCAACCAGCTTCAGAACATTCGTAGGGGTCTACGTGGTGACTCGATTGTGCTCATGGGTAAGAATACCATGATGAAGCGTACTATCAGGGTTCATGCAGACAAAACTGGTAACAAGACTTTCCTCAACCTCATTCCCCTTCTCGTGGGAAACGTGGGATTGATATTCACGAAGGGCGATCTTAAGGAGGTCAGCGAAGAGGTGGCCAAATACAAGGTTGGAGCTCCTGCGCGTGTTGGTCTGGTTGCTCCGATTGATGTCGTTGTCCCTCCTGGCAACACTGGACTAGATCCCTCCCAGACCTCTTTCTTCCAGGTGCTAAACATTCCCACCAAGATTAACAAGGGTACTGTTGAAATTATCACCCCCGTGGAACTGATTAGGAAGGGTGAGAAGGTTGGATCTTCTGAGGCTGCCTTATTGGCCAAGCTTGGCATAAGACCCTTCTCATATGGGCTTGTCGTCTTGTCCGTGTATGACAGTGGCTCTGTCTTTAGTCCCGAGGTTCTTGACTTAACTGAGGATGACCTCATGGAGAAGTTTGCTTCTGGGGTCTCCATGGTAACTTCTCTCTCCCTGGCCATTTCATACCCTACACTGGCAGCTGCTCCACACATGTTCCTCAATGCATACAAGAATGTTCTGGCCATCGCAGCTGAAACTGAGTATACATTCCCACAAGCTGAGAAAGTTAAAGAATATTTGAAGGATCCTAGTAAGTTTGCAGTCGCTGTGGCTGCGGACCCTGTTGATTCTGGTGCTGCTCCATCTGCTGCTGCTGCTGCTGCAGAGGAAAAGAAGGAAGAGCCTGCGGAGGAGTCCGATGATGACATGGGTTTTAGTTTGTTTGACTAA 966 0.4886 MVRATSKADKKLAYDAKLCHLLDEYSQILIVAADNVGSNQLQNIRRGLRGDSIVLMGKNTMMKRTIRVHADKTGNKTFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGEKVGSSEAALLAKLGIRPFSYGLVVLSVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVTSLSLAISYPTLAAAPHMFLNAYKNVLAIAAETEYTFPQAEKVKEYLKDPSKFAVAVAADPVDSGAAPSAAAAAAEEKKEEPAEESDDDMGFSLFD* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00869 321 Pfam 60s Acidic ribosomal protein 234 320 - -
Pte16g00869 321 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Pte16g00869 321 Pfam Ribosomal protein L10 8 108 IPR001790 -
Pte16g00869 321 MobiDBLite consensus disorder prediction 287 321 - -
Pte16g00869 321 Gene3D - 6 209 IPR043141 -
Pte16g00869 321 SUPERFAMILY Ribosomal protein L10-like 9 134 IPR043141 -
Pte16g00869 321 Gene3D - 114 185 IPR043164 -
Pte16g00869 321 FunFam 60S acidic ribosomal protein P0 113 186 - -
Pte16g00869 321 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 5 304 - -
Pte16g00869 321 MobiDBLite consensus disorder prediction 306 321 - -
Pte16g00869 321 PIRSF L10E 1 321 IPR030670 GO:0042254
Pte16g00869 321 CDD Ribosomal_P0_L10e 10 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00869 Pte-Chr16 27811227 27813603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00869 2 320 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 82.132 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00869 K02941 - cpap:110819288 523.857