LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte16g00865	ATGGCGACTAGCGAACGCACTGTGCTACAGTTTGCAACCTCATCACAAACTTTGTCGGCGAAGGTGCACCCTCTTGTATTCATCAACATATGCGACTGTTATGACAGACGCCCCGACCAGGCTGAGCGAGTCATCGGCACGCTCCTCGGCTCGTTTCTACCTGATGGCACCGTTGACGTTCGCAATTCTTATGCCGTTCCTCACAACGAGTCATTAGATCAGGTTGCTTTGGATATTGAGTACCACCACAGCATGCTTATATCTCACCAAAAAGTGAATCCAAAAGAAACCATAGTTGGATGGTTTTCAACTGGTCTGGGTGTCACTGGTGGTAGCGCACTAATCCATGAGTTTTATACCAGAGAACTGAGAGAAGTTCCAAGTCCAATGACTCCAATCCATTTGACTGTTGACACTGGATTTACTAATGGAACTGCAACTGTAAAAGCTTTCGTCTCCAACAATTTATCTCTTGGAGACCAGCCAATTGCTGCTCAGTTTCAGGAAATTCCTCTGGATCTTCGCATGGAAGAGGCTGAACGTGTTGGATTTCAAAATCTGAAATCAACCATTGTGGATAAAATTCCTACTGATCTAGAATCAATGGAAGGTTCTATGGAGCGATTGTTGGCTCTAATTGATGATGTCTATAAATATGTTGATGATGTTGTGGAAGGTCATGTTGCTCCTGATAACAACATCGGGAGGTTAATTTCTGATGCTGTATCCTCTCTTCCCAAAATTTCACCTGCACAATTTGATAAGCTTGTGAATAACAGCCTGCAGGACCATTTGCTCCTGCTATATTTGTCAAGCATGGCCCGAACACAATTGGCCTTGGCTGAAAAGTTGAATACTGCTGCACAGGTTCTGTAA	876	0.4406	MATSERTVLQFATSSQTLSAKVHPLVFINICDCYDRRPDQAERVIGTLLGSFLPDGTVDVRNSYAVPHNESLDQVALDIEYHHSMLISHQKVNPKETIVGWFSTGLGVTGGSALIHEFYTRELREVPSPMTPIHLTVDTGFTNGTATVKAFVSNNLSLGDQPIAAQFQEIPLDLRMEEAERVGFQNLKSTIVDKIPTDLESMEGSMERLLALIDDVYKYVDDVVEGHVAPDNNIGRLISDAVSSLPKISPAQFDKLVNNSLQDHLLLLYLSSMARTQLALAEKLNTAAQVL*	292

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte16g00865	291	Hamap	Eukaryotic translation initiation factor 3 subunit F [EIF3F].	18	287	IPR027531	GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Pte16g00865	291	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED	14	288	-	-
	Pte16g00865	291	Pfam	Maintenance of mitochondrial structure and function	178	284	IPR024969	-
	Pte16g00865	291	Pfam	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	18	120	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Pte16g00865	291	ProSiteProfiles	MPN domain profile.	20	157	IPR037518	-
	Pte16g00865	291	SMART	pad1_6	19	156	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Pte16g00865	291	CDD	MPN_eIF3f	21	284	IPR027531	GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Pte16g00865	291	Gene3D	Cytidine Deaminase, domain 2	8	191	-	-
	Pte16g00865	291	FunFam	Eukaryotic translation initiation factor 3 subunit F	8	192	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte16g00865	Pte-Chr16	27769206	27772269	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte16g00865	2	292	Eukaryotic Initiation Factors Gene Family	AT2G39990	71.477	1.54e-144	406

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte16g00865	K03249		-	qsu:112000365	446.817