Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00858 ATGACAACTTTGTATCCATCTTTACGTATGGTGGATTCGAGTTGGCTTCCGATGGATATGAATCCCACTGAATGGACCAAAGAAGAAAACAAGTTGTTTGAGAGTGCCCTGGCTATCTATGATGAGAACACACCAAACAGATGGCTCAAAGTGGCAGCTATGATCCCCGGAAAGACAGAATGGGATGTCATCCAACAGTACAAGGATTTGGTTGAAGATGTCAGTGAAATTGAAGCAGGTAGAGTCCCACTTCCAGGATATCTCTCATCCTCTTTCACATTAGAATTGGTTGATAGTAGAGACTATGGTGGCAGCAGGAAGAGCTCTCTGTCAGCCAGAGGTTCTGACAATGAAAGGAAAAAAGGTGTTCCTTGGACTGTTGAAGAACACAGACGCTTTCTGATGGGGCTTGTGAAGTATGGAAAAGGCGACTGGAGAAATATCTCTCGCAATTTTGTAGTCACGAAGACTCCTACTCAAGTGGCTAGCCATGCTCAGAAATACTACATAAGACAGCAGCACTCAGGAGCTAAAGACAGAAGAAGACCAAGTATCCATGACATCAAAATTAGCACTCTCACTGATGATGATGCCCATTCAGCAAATAACAGGACTCCTGCTGTGAATGAGGCCTCTATGGTGTCAACAAGGCAGAGGGTCAATGGGACGCCTACGGTGCTGTTCAACTGGAATCATCCTGAGTTTTTAAATGCAGATCAGGAAAGTTTGTTTGGGTCAACTTCATGTGATACCGCATTAGATCAATTCAAATTGCAGGAATATGCTCTGTATGATGACGATGCTACTTACATGTAA 816 0.4363 MTTLYPSLRMVDSSWLPMDMNPTEWTKEENKLFESALAIYDENTPNRWLKVAAMIPGKTEWDVIQQYKDLVEDVSEIEAGRVPLPGYLSSSFTLELVDSRDYGGSRKSSLSARGSDNERKKGVPWTVEEHRRFLMGLVKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQQHSGAKDRRRPSIHDIKISTLTDDDAHSANNRTPAVNEASMVSTRQRVNGTPTVLFNWNHPEFLNADQESLFGSTSCDTALDQFKLQEYALYDDDATYM* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00858 271 MobiDBLite consensus disorder prediction 101 122 - -
Pte16g00858 271 Gene3D - 123 174 - -
Pte16g00858 271 Pfam Myb-like DNA-binding domain 124 168 IPR001005 -
Pte16g00858 271 Pfam Myb-like DNA-binding domain 24 70 IPR001005 -
Pte16g00858 271 CDD SANT 124 168 IPR001005 -
Pte16g00858 271 SUPERFAMILY Homeodomain-like 23 77 IPR009057 -
Pte16g00858 271 SUPERFAMILY Homeodomain-like 119 173 IPR009057 -
Pte16g00858 271 NCBIfam myb-like DNA-binding domain, SHAQKYF class 120 172 IPR006447 GO:0003677
Pte16g00858 271 FunFam transcription factor MYB1R1 123 174 - -
Pte16g00858 271 ProSiteProfiles Myb-like domain profile. 117 169 IPR001005 -
Pte16g00858 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 173 IPR017930 -
Pte16g00858 271 Gene3D - 20 84 - -
Pte16g00858 271 ProSiteProfiles SANT domain profile. 125 173 IPR017884 -
Pte16g00858 271 ProSiteProfiles Myb-like domain profile. 17 71 IPR001005 -
Pte16g00858 271 CDD SANT 24 71 IPR001005 -
Pte16g00858 271 FunFam Transcription factor SRM1 18 84 - -
Pte16g00858 271 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 21 235 IPR043363 -
Pte16g00858 271 SMART sant 121 171 IPR001005 -
Pte16g00858 271 SMART sant 21 73 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00858 Pte-Chr16 27719514 27721323 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte16g00858 Myb_DNA-binding 7.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00858 - - qsa:O6P43_013906 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00858 16 27719514 27721323 Pte8g00734 8 30632508 30632936 RCT
Pte7g01313 7 37518210 37519582 Pte16g00858 16 27719514 27721323 RCT
Pte4g01183 4 42787754 42792016 Pte16g00858 16 27719514 27721323 RCT
Pte16g00858 16 27719514 27721323 Pte16g00858 16 27719514 27721323 RCT