Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00843 ATGGCTGGAAGGATCCTCGCTGGTTTACCGCCCGGAGAGCTCATCGCCGATGGTTTAGGTGGTCCACAACTCGGTGGTGGTGGTGGTGAAGCCGAGATGATAGTAGGTGGTGTGATTGATGTTGAAGTGAGTGCCGGTAGAGTGAAGGGATCATGGACACCGGAGGAAGACGCGATTCTAAGCCAGGTGGTAACTAAACTTGGGCCTAGGAATTGGAGTATGATCGCTAGGGGAATTCCTGGACGCTCTGGGAAGTCATGTAGACTTAGATGGTGTAATCAGCTTGATCCTGCTGTTAAACACAAACCCTTTAGCGATGAAGAGGACCGTATACTAGTTGCAGCCCATGCAGTGCATGGGAACAAATGGGCAGTTATTGCTAAACTTCTTCCTGGGAGAACTGATAATGCAATTAAGAACCACTGGAACTCTACCCTTAAGAAAAGGTATATGGAGATGGGAACATATCTACGAGTTTCTGGTGATACACTTAAGGATTGTAGCCTTGATAAAGCAAAAGTATCGTCTGAAGAAGCCATATCTGTTGAGGTTTTGAATTCATGCAATCCTATAGACAGTAGAAGTGAATCTGCTGACGACAGAAAGAAACTCTACGACAACGTGCCTGAAAGAAATGACAGTTCTAAAGTTGGAGAACATCAAAACTTGTTCCGACCTGTGGGGCGAGTCAGTGCATTTAATCTTTATACCTGTCCAGATCGTCTAACCAATAGGGTCACATCTTCAAGAGTAGTTCCGTTCCATGGCCCTTTGGTCCAATCATACAAATCAGATATCAGCCTTTGCAAAACATTGGAAGATACTCGTGATGAGGCTATGGTTCCATTGCATTGTGGTCATGGTTGCTGTGGTGATTCTGGTGGTGCTCAGCCTGGCAGTAGTTTACTAGGACCGGAGTTTGTCGAATACTTGGAAACTCCCTCTTTCTCAAATCCTGAAATAACATCAATTGCTACAGATTTGAATCATATCGCTTGGATAAAGAGTAGCCTTGCAAACAGCAGTTCCAAAGCGCCATTGCAAGCAGCTAGCTTGCCAGTTTATCAGGAAACTTCCTCTACATCACAAATGGGCTTTTCAGAAGACAGTCAGAAAAGGAACTACACCCAGCTTGATGAGGGGTGTAGTAGATTGGCGGACATAATGAAAGAAGTGCTATCTTCTCAGTTGCCAAGGCAACCTTTTCCAATGCCTGCAGAAGTTTAA 1227 0.4499 MAGRILAGLPPGELIADGLGGPQLGGGGGEAEMIVGGVIDVEVSAGRVKGSWTPEEDAILSQVVTKLGPRNWSMIARGIPGRSGKSCRLRWCNQLDPAVKHKPFSDEEDRILVAAHAVHGNKWAVIAKLLPGRTDNAIKNHWNSTLKKRYMEMGTYLRVSGDTLKDCSLDKAKVSSEEAISVEVLNSCNPIDSRSESADDRKKLYDNVPERNDSSKVGEHQNLFRPVGRVSAFNLYTCPDRLTNRVTSSRVVPFHGPLVQSYKSDISLCKTLEDTRDEAMVPLHCGHGCCGDSGGAQPGSSLLGPEFVEYLETPSFSNPEITSIATDLNHIAWIKSSLANSSSKAPLQAASLPVYQETSSTSQMGFSEDSQKRNYTQLDEGCSRLADIMKEVLSSQLPRQPFPMPAEV* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00843 408 PANTHER MYB PROTEIN-RELATED 49 250 - -
Pte16g00843 408 CDD SANT 51 93 IPR001005 -
Pte16g00843 408 SMART sant 100 148 IPR001005 -
Pte16g00843 408 SMART sant 48 97 IPR001005 -
Pte16g00843 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 150 IPR017930 -
Pte16g00843 408 CDD SANT 103 146 IPR001005 -
Pte16g00843 408 FunFam MYB transcription factor 49 100 - -
Pte16g00843 408 ProSiteProfiles Myb-like domain profile. 44 95 IPR001005 -
Pte16g00843 408 SUPERFAMILY Homeodomain-like 46 142 IPR009057 -
Pte16g00843 408 ProSiteProfiles Myb-like domain profile. 96 146 IPR001005 -
Pte16g00843 408 Gene3D - 48 100 - -
Pte16g00843 408 Pfam Myb-like DNA-binding domain 49 95 IPR001005 -
Pte16g00843 408 Pfam Myb-like DNA-binding domain 102 145 IPR001005 -
Pte16g00843 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 99 IPR017930 -
Pte16g00843 408 Gene3D - 103 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00843 Pte-Chr16 27486119 27489159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00843 47 355 MYB Transcription Factor Family AT3G55730 48.148 1.40e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte16g00843 Myb_DNA-binding 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00843 K09422 - qsu:112007270 399.823